Factsheet for VIT_03s0038g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008785	Potato	cytosol	61.88	71.01
KRH36100	Soybean	plastid	67.88	69.37
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	62.31	65.84
GSMUA_Achr3P00600_001	Banana	mitochondrion	49.46	46.39
HORVU5Hr1G084630.1	Barley	cytosol	45.61	45.61
Zm00001d006254_P001	Maize	cytosol	45.18	45.57
EER99281	Sorghum	mitochondrion	45.61	45.22
TraesCS5D01G341500.1	Wheat	cytosol	45.18	45.09
TraesCS5B01G335800.1	Wheat	cytosol	45.4	45.01
TraesCS5A01G336800.1	Wheat	cytosol	44.75	44.75
Os09t0542700-00	Rice	cytosol	44.11	42.74
VIT_13s0019g04920.t01	Wine grape	plastid	40.04	41.37
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	34.9	40.15
VIT_04s0008g04270.t01	Wine grape	mitochondrion	40.47	38.41
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	41.97	38.06
VIT_08s0007g04850.t01	Wine grape	cytosol	40.47	37.65
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	41.11	35.04
VIT_11s0016g04500.t01	Wine grape	cytosol	39.61	34.64
VIT_14s0219g00010.t01	Wine grape	cytosol	6.64	24.03

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100247024	wikigene:100247024	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB60598	ProteinID:CCB60598.1	UniProt:F6I0Y2	EMBL:FN596508	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006605
GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234
GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	EntrezGene:LOC100247024	wikigene:LOC100247024	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF28	SUPFAM:SSF48371	UniParc:UPI00015C85A7
ArrayExpress:VIT_03s0038g02850	EnsemblPlantsGene:VIT_03s0038g02850	EnsemblPlants:VIT_03s0038g02850.t01	RefSeq:XP_002278196	RefSeq:XP_002278196.1	SEG:seg

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:F6I0Y2]

Coordinates

chr3:-:2022219..2024081

Molecular Weight (calculated)

53867.1 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.288

Length

467 amino acids

Sequence
(BLAST)

001: MGVERNTPKA SPKKKPTTTL QYLFDLDSKS NGNGHFSNSG KQSSLDSENE ELLSIITYCT FVFTFTDPSE SPSQQDLKRL KLTQLLSLVK STKKPLHDQI
101: LSHLVAMLSA NLFRPLPPSS NASVIFDLPD EEDTASTPAP AWPHLQIVYE ILLRLVLNTD AKALRDHIDH SFVLNLLSLF QSEDPRERES LKNVYHRIYS
201: KFTFYRSFMR KAMNDVFLHY VFETERPCGI GDLLEIWGSI INGFTIPLKE EHKLFLMRVL IPLHKPKGLQ VYHRQLAYCV SQFVQKEPVL GGIVVRGILK
301: YWPITNCQKQ VLLVGELEEL VEIIDPEQYR KLALPLFTQI TRCLNSWNSQ VAERALYVLN NEQFRKMAQE AMDEVFPVIV EGMEKNLKWH WSKSVRQLTQ
401: TVKVMLEEME PCLYSKCVIN LELRESAAQQ EEIKRREKWE RIERAADAAT AAQNQFLQPP HCICVSN

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.