Factsheet for VIT_12s0059g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14754	Soybean	cytosol, plastid	77.19	78.92
KRH73387	Soybean	cytosol, plastid	76.46	78.03
CDY44320	Canola	cytosol, plastid	72.26	77.95
Bra031294.1-P	Field mustard	cytosol, plastid	72.26	77.8
CDY38628	Canola	cytosol, mitochondrion	72.08	77.6
AT4G15415.5	Thale cress	cytosol, plastid	73.36	77.01
CDY22925	Canola	plastid	69.16	76.72
Bra039553.1-P	Field mustard	plastid	68.8	76.32
CDY48287	Canola	plastid	68.98	76.21
PGSC0003DMT400001856	Potato	cytosol, mitochondrion, plastid	75.36	75.78
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	55.11	74.38
AT3G21650.2	Thale cress	nucleus, plastid	73.91	74.18
Bra012790.1-P	Field mustard	mitochondrion, plastid	65.88	73.82
CDX90593	Canola	cytosol, plastid	62.23	73.49
CDY09766	Canola	mitochondrion, plastid	62.23	73.33
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	66.61	70.87
GSMUA_Achr9P19120_001	Banana	mitochondrion, plastid	59.49	69.96
VIT_14s0219g00010.t01	Wine grape	cytosol	16.06	68.22
VIT_13s0019g04920.t01	Wine grape	plastid	51.46	62.39
VIT_08s0007g04850.t01	Wine grape	cytosol	56.2	61.35
VIT_04s0008g04270.t01	Wine grape	mitochondrion	53.1	59.15
VIT_11s0016g04500.t01	Wine grape	cytosol	54.38	55.81
VIT_03s0038g02850.t01	Wine grape	cytosol	35.04	41.11

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100258598	MapMan:18.4.24.1.2.3	UniProt:A5AQF8	EMBL:AM432194	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CAN75915	ProteinID:CAN75915.1	ProteinID:CCB51985	ProteinID:CCB51985.1	EMBL:FN595765
GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF27	SUPFAM:SSF48371
TIGR:TC59670	UniParc:UPI000151F222	ArrayExpress:VIT_12s0059g01170	EnsemblPlantsGene:VIT_12s0059g01170	EnsemblPlants:VIT_12s0059g01170.t01	unigene:Vvi.11832
RefSeq:XP_010657226.1	SEG:seg	:	:	:	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A5AQF8]

Coordinates

chr12:-:6095505..6101121

Molecular Weight (calculated)

62018.1 Da

IEP (calculated)

8.539

GRAVY (calculated)

-0.372

Length

548 amino acids

Sequence
(BLAST)

001: MIKQLLGKLP RKPSSKSSHN DSNHDGAVAP VNSSQGPNSN SMGPGHKANS GSAKSSNSSA SASRSNNGTL APHSSNSGKT NHGKKSAAVA TVGPVLASAA
101: YEALPSFRDV PNPEKPNLFI RKLNLCCVVF DFNDPSKNPK EKDIKRQTLL ELVDYISSVS SKFNETAMQE ITKMVALNLF RTFSSSNHDN KTPEMYDPEE
201: EEPTMEPAWP HLQIVYEFLL RFVASSETDA KLAKRYVDHS FVLRLLDLFD SEDQREREYL KTILHRIYGK FMVHRPFIRK AINNIFYRFI FETEKHNGIA
301: ELLEILGSII NGFALPLKEE HKLFLVRALI PLHKPKCVSM YHQQLSYCIT QFVEKDFKLA DTVIRGLLKY WPITNSSKEV MFLGELEEVL EATQPAEFQR
401: CMVPLFRQIG RCLNSSHFQV AERALFLWNN DHIRNLITQN CMVILPIIFP ALERNARSHW NQAVQSLTLN VRKIFSDQDQ VLLDECLVKF QEDEAKEREI
501: QEKRESTWKR LEDLAASKAV SNEAVLVSKF VSSVAISTST NPRTTAGA

Best Arabidopsis Sequence Match ( AT4G15415.5 )
(BLAST)

001: MIKQIFGKLP RKPSKSSHND SNPNGEGGVN SYYIPNSGIS SISKPSSKSS ASNSNGANGT VIAPSSTSSN RTNQVNGVYE ALPSFRDVPT SEKPNLFIKK
101: LSMCCVVFDF NDPSKNLREK EIKRQTLLEL VDYIATVSTK LSDAAMQEIA KVAVVNLFRT FPSANHESKI LETLDVDDEE PALEPAWPHL QVVYELLLRF
201: VASPMTDAKL AKRYIDHSFV LKLLDLFDSE DQREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIFE TEKHNGIAEL LEILGSIING FALPLKEEHK
301: LFLIRALIPL HRPKCASAYH QQLSYCIVQF VEKDFKLADT VIRGLLKYWP VTNSSKEVMF LGELEEVLEA TQAAEFQRCM VPLFRQIARC LNSSHFQVAE
401: RALFLWNNDH IRNLITQNHK VIMPIVFPAM ERNTRGHWNQ AVQSLTLNVR KVMAETDQIL FDECLAKFQE DEANETEVVA KREATWKLLE ELAASKSVSN
501: EAVLVPRFSS SVTLATGKTS GS

Arabidopsis Description

B'GAMMASerine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8RW96]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.