Factsheet for PGSC0003DMT400001856

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	75.78	75.36
CDY44320	Canola	cytosol, plastid	68.07	73.03
Bra031294.1-P	Field mustard	cytosol, plastid	67.89	72.69
KRH73387	Soybean	cytosol, plastid	71.56	72.63
KRH14754	Soybean	cytosol, plastid	71.38	72.57
CDY38628	Canola	cytosol, mitochondrion	67.71	72.5
Bra039553.1-P	Field mustard	plastid	65.14	71.86
CDY22925	Canola	plastid	64.77	71.46
CDY48287	Canola	plastid	64.95	71.37
Bra012790.1-P	Field mustard	mitochondrion, plastid	63.49	70.76
CDY09766	Canola	mitochondrion, plastid	60.18	70.54
AT4G15415.5	Thale cress	cytosol, plastid	67.52	70.5
CDX90593	Canola	cytosol, plastid	59.63	70.04
AT3G21650.2	Thale cress	nucleus, plastid	69.72	69.6
PGSC0003DMT400045008	Potato	cytosol, plastid	63.12	68.53
GSMUA_Achr9P19120_001	Banana	mitochondrion, plastid	58.17	68.03
PGSC0003DMT400052115	Potato	plastid	64.22	67.31
PGSC0003DMT400017950	Potato	plastid	64.04	66.6
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	55.05	60.98
PGSC0003DMT400060086	Potato	cytosol, plastid	52.29	60.0
PGSC0003DMT400067211	Potato	cytosol, plastid	50.28	55.02
PGSC0003DMT400034814	Potato	cytosol	21.1	54.5
PGSC0003DMT400002753	Potato	plastid	46.61	50.2
PGSC0003DMT400008785	Potato	cytosol	31.56	42.26

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102601978	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:M0ZJ71
PFAM:PF01603	EnsemblPlantsGene:PGSC0003DMG400000695	PGSC:PGSC0003DMG400000695	EnsemblPlants:PGSC0003DMT400001856	PIRSF:PIRSF028043	InterPro:PP2A_B56
PANTHER:PTHR10257	PANTHER:PTHR10257:SF27	SUPFAM:SSF48371	UniParc:UPI000295CD69	RefSeq:XP_006357949.1	SEG:seg

Description

Protein phosphatase 2a, regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400000695]

Coordinates

chr7:+:44945726..44951339

Molecular Weight (calculated)

62292.8 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.317

Length

545 amino acids

Sequence
(BLAST)

001: MIKQILGKLP RKPSKSSSSP NDSSQNEVSP FSSVNSNSNS YSVTDSSNNS KGSGNVGKTL NSTSSGMYEI TSNGNHVPVK PNQGKKSVRV NGQVGPSVTN
101: SVLSYEVLPS VREAPSSEKQ NLLIRKLQMC CVLFDFSDPT KNLKEKDVKR QTLLELVDYI SAVSSKFNEV TMQELTKMVA ANLFRTLPSF NHDNGLLDMF
201: DPEEDEPTME PSWPHLQVVY ELLLRFVASS ETDAKLAKRY VDHSFVLRLL ELFDSEDQRE REYLKTILHR VYGKFMVHRP FIRKAINNIF YRFIFETEKH
301: NGIAELLEIL GSIINGFALP LKEEHKLFLV RALIPLHKPK CLAMYHQQLM YCITQFVEKD FKLSDIVIRG LLKYWPVTNS GKEVMFLGEL EEVLEATQAA
401: EFQRCMVPLF RQIGRCLNSS HFQVAERALF LWNNDHIRNL IVQNREVILP LIFPLLEKNT RGHWNEAVQS LTLNVRKIFS DADQALFDEC LEKFKEDEIK
501: DKEAQERREL TWKRLEDLAA SNFVSNEAVL VSRLASAVVI DSSTN

Best Arabidopsis Sequence Match ( AT4G15415.5 )
(BLAST)

001: MIKQIFGKLP RKPSKSSHND SNPNGEGGVN SYYIPNSGIS SISKPSSKSS ASNSNGANGT VIAPSSTSSN RTNQVNGVYE ALPSFRDVPT SEKPNLFIKK
101: LSMCCVVFDF NDPSKNLREK EIKRQTLLEL VDYIATVSTK LSDAAMQEIA KVAVVNLFRT FPSANHESKI LETLDVDDEE PALEPAWPHL QVVYELLLRF
201: VASPMTDAKL AKRYIDHSFV LKLLDLFDSE DQREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIFE TEKHNGIAEL LEILGSIING FALPLKEEHK
301: LFLIRALIPL HRPKCASAYH QQLSYCIVQF VEKDFKLADT VIRGLLKYWP VTNSSKEVMF LGELEEVLEA TQAAEFQRCM VPLFRQIARC LNSSHFQVAE
401: RALFLWNNDH IRNLITQNHK VIMPIVFPAM ERNTRGHWNQ AVQSLTLNVR KVMAETDQIL FDECLAKFQE DEANETEVVA KREATWKLLE ELAASKSVSN
501: EAVLVPRFSS SVTLATGKTS GS

Arabidopsis Description

B'GAMMASerine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8RW96]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.