CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90593	Canola	cytosol, plastid	96.34	96.55
CDY22925	Canola	plastid	84.73	79.76
CDY48287	Canola	plastid	84.95	79.64
AT4G15415.5	Thale cress	cytosol, plastid	86.24	76.82
CDY38628	Canola	cytosol, mitochondrion	77.85	71.12
CDY44320	Canola	cytosol, plastid	77.63	71.06
CDX98102	Canola	cytosol, plastid	62.58	62.85
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	73.33	62.23
PGSC0003DMT400001856	Potato	cytosol, mitochondrion, plastid	70.54	60.18
CDX83578	Canola	cytosol	62.37	60.17
KRH73387	Soybean	cytosol, plastid	69.46	60.15
KRH14754	Soybean	cytosol, plastid	69.03	59.89
GSMUA_Achr9P19120_001	Banana	mitochondrion, plastid	58.92	58.8
CDY30030	Canola	plastid	62.58	58.67
CDY41574	Canola	cytosol	60.0	57.17
CDY13605	Canola	cytosol, plastid	62.37	56.97
CDY54611	Canola	cytosol	59.57	56.53
CDX83579	Canola	cytosol	56.99	55.79
CDY13606	Canola	cytosol	56.77	55.7
CDX87083	Canola	cytosol	42.15	55.68
CDX73997	Canola	cytosol, plastid	58.49	55.62
CDY07942	Canola	cytosol, plastid	58.06	54.99
CDY04885	Canola	cytosol, plastid	54.41	52.49
CDY05497	Canola	mitochondrion, plastid	54.62	52.37
CDY54903	Canola	mitochondrion, plastid	54.19	51.85
CDY44370	Canola	cytosol, plastid	53.55	51.55
CDX88186	Canola	cytosol, plastid	52.69	49.49
CDX80521	Canola	plastid	52.69	49.4
CDX67616	Canola	cytosol	51.4	48.88
CDY56962	Canola	cytosol, plastid	51.61	48.78
CDY07514	Canola	cytosol	50.97	48.47
CDX73425	Canola	cytosol, plastid	52.04	45.07
CDY08231	Canola	mitochondrion	31.4	43.32
CDY04189	Canola	cytosol, golgi, nucleus	20.22	41.41
CDY50168	Canola	cytosol	13.98	40.37
CDY67412	Canola	mitochondrion	27.53	39.51
CDY35507	Canola	golgi	23.44	35.97
CDY40986	Canola	nucleus, plastid	58.06	28.3
CDX99733	Canola	nucleus, plastid	58.06	26.68

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078F8T8	UniProt:A0A078F8T8	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY09766	ProteinID:CDY09766	ProteinID:CDY09766.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008601	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00031466001	InterPro:IPR011989	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF27	SUPFAM:SSF48371	UniParc:UPI0004EF0A23

Description

BnaC07g32950DBnaC07g32950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8T8]

Coordinates

chrLK031998:-:908598..910882

Molecular Weight (calculated)

52966.0 Da

IEP (calculated)

8.149

GRAVY (calculated)

-0.214

Length

465 amino acids

Sequence
(BLAST)

001: MIKQIFGKLP KKTSKSSSHP NGEGVVAVNP YHTPPPTSNR PNGVYEPLPS FRDVPASEKP TLFIKKLTMC CVLFDFTDPS KNLREKETKR QTLLDLVDYI
101: ATVPTKFTEA AMQEIAKLAT INLFRTFPTA ANHESKVLET LDGGDDEELA LEPSWPHLQL VYELLLRFVA SSMTDAKLAK RYVDHSFVLK LLELFDSVDQ
201: REREYLKTIL HRIYGKFMVH RPFIRKAINN IFYRFVFETE RHNGVAELLE ILGSIINGFA LPLKEEHKLF LFVEKDSKLA DTVVRGLLRY WPVTNSSKEV
301: MFLGELEEVL EGTQAAEFQR CMVPLFRRIA RCLNSSHFQV AERALFLWNN DHIRNLITQN HKVIMPIVFP AMERNMCGHW NQAVKNLTLN VRKVLAETDQ
401: ALFDECLAKF QEDEASKPEV AAKREATWKL LEDLAASKSV SSEAVLVQRF SSSVTITTSG KASGS

Best Arabidopsis Sequence Match ( AT4G15415.5 )
(BLAST)

001: MIKQIFGKLP RKPSKSSHND SNPNGEGGVN SYYIPNSGIS SISKPSSKSS ASNSNGANGT VIAPSSTSSN RTNQVNGVYE ALPSFRDVPT SEKPNLFIKK
101: LSMCCVVFDF NDPSKNLREK EIKRQTLLEL VDYIATVSTK LSDAAMQEIA KVAVVNLFRT FPSANHESKI LETLDVDDEE PALEPAWPHL QVVYELLLRF
201: VASPMTDAKL AKRYIDHSFV LKLLDLFDSE DQREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIFE TEKHNGIAEL LEILGSIING FALPLKEEHK
301: LFLIRALIPL HRPKCASAYH QQLSYCIVQF VEKDFKLADT VIRGLLKYWP VTNSSKEVMF LGELEEVLEA TQAAEFQRCM VPLFRQIARC LNSSHFQVAE
401: RALFLWNNDH IRNLITQNHK VIMPIVFPAM ERNTRGHWNQ AVQSLTLNVR KVMAETDQIL FDECLAKFQE DEANETEVVA KREATWKLLE ELAASKSVSN
501: EAVLVPRFSS SVTLATGKTS GS

Arabidopsis Description

B'GAMMASerine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8RW96]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.