CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67616	Canola	cytosol	98.57	98.57
CDY56962	Canola	cytosol, plastid	90.39	89.84
AT3G54930.2	Thale cress	cytosol, plastid	90.59	89.13
Bra003201.1-P	Field mustard	golgi	68.71	88.19
CDX73425	Canola	cytosol, plastid	90.18	82.12
PGSC0003DMT400060086	Potato	cytosol, plastid	60.94	62.74
VIT_13s0019g04920.t01	Wine grape	plastid	57.67	62.39
GSMUA_Achr6P29780_001	Banana	mitochondrion	47.65	62.13
CDY41574	Canola	cytosol	61.76	61.89
CDY54611	Canola	cytosol	61.76	61.63
CDX73997	Canola	cytosol, plastid	61.35	61.35
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	56.03	61.02
CDY07942	Canola	cytosol, plastid	60.12	59.88
GSMUA_Achr7P17010_001	Banana	mitochondrion	50.31	59.71
GSMUA_Achr7P07360_001	Banana	cytosol	49.28	58.07
CDY04885	Canola	cytosol, plastid	57.06	57.88
CDY44370	Canola	cytosol, plastid	56.44	57.14
TraesCS4B01G026300.1	Wheat	mitochondrion	58.9	55.81
TraesCS4D01G023700.1	Wheat	mitochondrion	58.69	55.62
KXG37844	Sorghum	plastid	59.3	55.34
CDX98102	Canola	cytosol, plastid	52.15	55.08
Zm00001d013544_P002	Maize	cytosol, plastid	58.69	54.88
KRH35993	Soybean	cytosol	54.4	54.85
Os03t0681800-00	Rice	plasma membrane	58.49	53.46
Zm00001d033370_P001	Maize	plastid	60.12	53.16
CDY30030	Canola	plastid	52.56	51.81
CDY22925	Canola	plastid	51.94	51.42
CDY48287	Canola	plastid	51.94	51.21
CDX87083	Canola	cytosol	36.81	51.14
CDY44320	Canola	cytosol, plastid	52.97	50.98
CDY09766	Canola	mitochondrion, plastid	48.47	50.97
CDX90593	Canola	cytosol, plastid	48.26	50.86
CDX83578	Canola	cytosol	50.1	50.83
CDY38628	Canola	cytosol, mitochondrion	52.76	50.69
CDY13606	Canola	cytosol	48.47	50.0
CDX83579	Canola	cytosol	48.26	49.68
CDY13605	Canola	cytosol, plastid	50.31	48.33
CDY08231	Canola	mitochondrion	33.13	48.07
CDY05497	Canola	mitochondrion, plastid	45.4	45.77
CDY54903	Canola	mitochondrion, plastid	45.19	45.47
CDY67412	Canola	mitochondrion	30.06	45.37
CDX80521	Canola	plastid	45.19	44.56
CDX88186	Canola	cytosol, plastid	44.79	44.24
CDY35507	Canola	golgi	26.79	43.23
CDY50168	Canola	cytosol	12.68	38.51
CDY04189	Canola	cytosol, golgi, nucleus	14.31	30.84
CDY40986	Canola	nucleus, plastid	47.44	24.32
CDX99733	Canola	nucleus, plastid	48.06	23.22

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078F3H9	UniProt:A0A078F3H9	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY07514	ProteinID:CDY07514	ProteinID:CDY07514.1	ncoils:Coil	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008601	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00124550001	InterPro:IPR011989
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF45	SUPFAM:SSF48371
UniParc:UPI0004EE96E4	SEG:seg	:	:	:	:

Description

BnaC06g15500DSerine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A078F3H9]

Coordinates

chrLK031979:+:228229..229773

Molecular Weight (calculated)

56228.7 Da

IEP (calculated)

5.986

GRAVY (calculated)

-0.297

Length

489 amino acids

Sequence
(BLAST)

001: MLNKIMKLGG KKFNKSDQDN TSGVNTVVRS SRPTTAAATP SSTGESQSAA PSPSQTPNHP MFTAPPSLEV LPLLKDVSSS DRPLLFMKKA HMCSCQCDFS
101: DSLIMPREKE IKRQTLLELV DFLHSSSGKV NETMQSELIR MVSANMFRCL PPAHYENTGA PPEGNDPEEE EPYLEPWWPH LQLVYELLLR YVVSSEIEPK
201: TAKKFINHTF VSRLLDLFDS EDPREREYLK TVLHRIYGKF IFHRPFIRCS IYNIFYKYLY ETERCVGIGE LLEIIGSVIN GFTVPMREEH VLYLVKAILP
301: LHKSKGISIF HQQLSYCVVQ FVEKDYKLAD TVIRGLLKYW PLTNCNKEVL FLGELEEVLD VTEPSEFQHC VVPLFRQIGK CLNSANFQVA ERALFLWNNE
401: HIVGLIAENK DVIFPIIFEA LERNMKGHWN QAVHGLSENV RRMFMEMDTE LFEECEKQHA ENEAKASELL EQREMTWKRL EEAASLAAN

Best Arabidopsis Sequence Match ( AT3G54930.2 )
(BLAST)

001: MFNKIIKLGQ KKFNKSDQHH QDNNNNNNNT STNTVVRGSR TTTPAPSSVS NGESQTTAQS PSQTPNHPMF TTTPILEVLP LLKDVSSSDR PLLFMKKAHM
101: CSCHCDFSDT LIMPREKEIK RQTLLELVDF LHSSSGKVNE TMQSELIRMV SANIFRCLPP AYHENTGAPP EGNDPEEEEP YLEPWWPHLQ LVYELLLRYV
201: VSSEIEPKTA KKFINHTFVS RLLDLFDSED PREREYLKTV LHRIYGKFIF HRPFIRCSIY NIFYKFLYET ERCIGIGELL EILGSVINGF TVPMREEHRL
301: YLVKAILPLH KSKGISIYHQ QLAYCVTQFV EKDYKLADTV IRGLLKFWPL TNCQKEVLFL GELEEVLDAT EPSEFQQCVV PLFTQIGKCL NSAHFQVAER
401: ALFLWNNEHI VGLIAQNKDV IFPIIFEALE RNMKGHWNQA VHGLSENVRR MFLEMDTELF EECEKQYLEN EAKACELLEQ RELTWKRLEE AASLAAN

Arabidopsis Description

B'EPSILONSerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform [Source:UniProtKB/Swiss-Prot;Acc:Q9SV41]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.