CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73997	Canola	cytosol, plastid	97.56	97.95
Bra001296.1-P	Field mustard	cytosol, plastid	96.74	97.14
CDY41574	Canola	cytosol	91.45	92.01
CDY54611	Canola	cytosol	91.24	91.43
AT3G09880.1	Thale cress	cytosol, plastid	92.67	91.18
KRH67758	Soybean	plastid	75.36	78.72
KRG96039	Soybean	cytosol, plastid	74.75	78.59
CDY04885	Canola	cytosol, plastid	76.37	77.8
KRH19952	Soybean	cytosol	76.17	77.43
CDY44370	Canola	cytosol, plastid	75.76	77.02
KRH32554	Soybean	cytosol	75.97	76.75
Solyc10g083920.1.1	Tomato	nucleus	73.32	73.17
VIT_08s0007g04850.t01	Wine grape	cytosol	74.54	72.91
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	72.51	72.36
Solyc09g008400.2.1	Tomato	nucleus	71.89	71.6
CDX98102	Canola	cytosol, plastid	59.27	62.85
CDY08231	Canola	mitochondrion	41.96	61.13
CDY56962	Canola	cytosol, plastid	60.9	60.77
CDX67616	Canola	cytosol	60.08	60.33
CDY07514	Canola	cytosol	59.88	60.12
CDY30030	Canola	plastid	59.47	58.87
CDY38628	Canola	cytosol, mitochondrion	60.29	58.15
CDY22925	Canola	plastid	58.45	58.1
CDY09766	Canola	mitochondrion, plastid	54.99	58.06
CDY44320	Canola	cytosol, plastid	59.88	57.87
CDY48287	Canola	plastid	58.45	57.86
CDX90593	Canola	cytosol, plastid	54.58	57.76
CDY67412	Canola	mitochondrion	37.88	57.41
CDX83578	Canola	cytosol	56.21	57.26
CDY13606	Canola	cytosol	54.79	56.75
CDX83579	Canola	cytosol	54.79	56.63
CDX87083	Canola	cytosol	40.12	55.97
CDX73425	Canola	cytosol, plastid	61.1	55.87
CDY35507	Canola	golgi	34.22	55.45
CDY13605	Canola	cytosol, plastid	56.01	54.03
CDY05497	Canola	mitochondrion, plastid	50.92	51.55
CDY54903	Canola	mitochondrion, plastid	50.92	51.44
CDX80521	Canola	plastid	51.12	50.6
CDX88186	Canola	cytosol, plastid	50.92	50.51
CDY50168	Canola	cytosol	13.65	41.61
CDY04189	Canola	cytosol, golgi, nucleus	16.29	35.24
CDY40986	Canola	nucleus, plastid	55.4	28.51
CDX99733	Canola	nucleus, plastid	55.4	26.88

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078F4F2	UniProt:A0A078F4F2	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY07942	ProteinID:CDY07942	ProteinID:CDY07942.1	ncoils:Coil	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008601	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00125147001	InterPro:IPR011989
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371
UniParc:UPI0004EC09A3	SEG:seg	:	:	:	:

Description

BnaC03g35810DBnaC03g35810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4F2]

Coordinates

chrLK031982:-:220834..223044

Molecular Weight (calculated)

56691.6 Da

IEP (calculated)

7.277

GRAVY (calculated)

-0.352

Length

491 amino acids

Sequence
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PPSSYGPGSN VVVSHASRGA LVQSPVTAAT PQPPPMTSVE PLPLFRDVPV SERQALFLRK VQNCCFLFDF TDTVKNAREK
101: DIKRQTLLEL VDFIQSGASK IISESCQEEM VKMVSLNIFR SLPPGSHENT GQEPADPEEE EPYLDPSWPH LQLVYELLLR YVVSTDTDTK VAKRYIHHSF
201: VLKLLDLFDS EDPREREYLK TILHRIYGKF MVHRPFIRKA INNIFYRFIY ETERHSGIGE LLEILGSIIN GFALPMKEEH KLFLIRVLIP LHKPKPMAVY
301: HQQLSYCIVQ FVEKDYKLAD TVIRGLLKYW PVTNCTKENL FLTELEEVLE ATQPVEFQRC MVPLFQQIGR SLNSSHFQVA ERALFLWNNE HIVGLIAQNR
401: TVILPIIYPA LEKNIQSHWN QAVHGLTTNI KKMFMEMDPE LFEECQRQYE EKQARSKEVE EQRLLSWKRL AEAAAKRDRV GGGGEDHMIT S

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.