Factsheet for Solyc09g008400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 4
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083920.1.1	Tomato	nucleus	81.95	82.11
KRG96039	Soybean	cytosol, plastid	72.82	76.87
KRH67758	Soybean	plastid	73.02	76.6
KRH32554	Soybean	cytosol	75.05	76.13
KRH19952	Soybean	cytosol	74.04	75.57
Bra029801.1-P	Field mustard	cytosol, plastid	73.02	74.07
VIT_08s0007g04850.t01	Wine grape	cytosol	75.25	73.9
CDY54611	Canola	cytosol	73.43	73.88
CDY41574	Canola	cytosol	72.82	73.57
Bra001296.1-P	Field mustard	cytosol, plastid	72.41	73.01
AT3G09880.1	Thale cress	cytosol, plastid	73.83	72.95
CDX73997	Canola	cytosol, plastid	72.21	72.8
CDY07942	Canola	cytosol, plastid	71.6	71.89
AT5G03470.1	Thale cress	cytosol	71.81	71.52
CDY04885	Canola	cytosol, plastid	66.13	67.63
Bra028832.1-P	Field mustard	cytosol, plastid	65.31	66.81
CDY44370	Canola	cytosol, plastid	65.31	66.67
Solyc05g055530.2.1	Tomato	cytosol	27.18	62.04
Solyc05g014340.2.1	Tomato	cytosol	58.01	56.97
Solyc02g067980.2.1	Tomato	nucleus	60.04	56.49
CDY08231	Canola	mitochondrion	38.34	56.08
Solyc02g093800.2.1	Tomato	plastid	59.03	55.64
Bra031075.1-P	Field mustard	mitochondrion	34.28	53.48
CDY67412	Canola	mitochondrion	34.48	52.47
Solyc06g065690.2.1	Tomato	cytosol, plastid	50.71	50.2
CDY35507	Canola	golgi	30.43	49.51
Solyc12g006920.1.1	Tomato	plastid	49.29	48.02
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	34.28	38.24

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4CQM8	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF45	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc09g008400.2
EnsemblPlants:Solyc09g008400.2.1	UniParc:UPI000276BEF4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:1854557..1859965

Molecular Weight (calculated)

56500.5 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.219

Length

493 amino acids

Sequence
(BLAST)

001: MLNKIIKRGQ KKVPKSDPSD FVVAASGNRS SGSVSTSNVV VNHASRGAGA GVGVVNNSTQ QQIVMSAAVP APGTMEALPL LKDVPMAERQ SLFLRKLQVC
101: CYQFDFNDTM KMVREKEIKR QTLAELVDCV QSNSLKISEI NQEEMLKMIS VNIFRCLPPA SHENTGSENV EPEEEEQYLE ASWPHLQLVY ELLLRYIVSA
201: DTDTKVAKRF IDHSFVLKLL DSFESEDPRE REYLKTILHR IYGKFMVHRP FIRKAINNIF YRFIYETERH SGIGELLEIL GSIINGFALP MKEEHKLFLV
301: RALIPLHKPK PIAMYHQQLS YCIVQFVEKD YKLCDTVIRG LLKYWPVTNC QKEVLFLGEL EEVLEATQAA EFQRCMVPLF RQVARCLNSP HFQVAERALF
401: LWNNEHVVSL IAQNRNVILP IIFEALEKNI RSHWNQAVHG LTVNVRKMFL EMDADLFEDC QKQYTEKAAR ASDLEKQRDL RWQRLAAAAG QGG

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.