CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96039	Soybean	cytosol, plastid	97.02	97.64
KRH32554	Soybean	cytosol	84.47	81.69
KRH19952	Soybean	cytosol	83.83	81.57
CDY54611	Canola	cytosol	80.43	77.14
Bra029801.1-P	Field mustard	cytosol, plastid	79.57	76.95
CDY41574	Canola	cytosol	79.79	76.84
CDX73997	Canola	cytosol, plastid	79.36	76.28
Bra001296.1-P	Field mustard	cytosol, plastid	79.15	76.07
CDY07942	Canola	cytosol, plastid	78.72	75.36
AT3G09880.1	Thale cress	cytosol, plastid	79.57	74.95
Solyc10g083920.1.1	Tomato	nucleus	77.87	74.39
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	77.45	73.98
VIT_08s0007g04850.t01	Wine grape	cytosol	78.09	73.11
Solyc09g008400.2.1	Tomato	nucleus	76.6	73.02
AT5G03470.1	Thale cress	cytosol	76.6	72.73
CDY04885	Canola	cytosol, plastid	71.28	69.5
CDY44370	Canola	cytosol, plastid	70.43	68.53
Bra028832.1-P	Field mustard	cytosol, plastid	70.21	68.46
KRG90768	Soybean	extracellular, mitochondrion	12.55	62.77
KRH35993	Soybean	cytosol	64.68	62.68
CDY08231	Canola	mitochondrion	41.49	57.86
KRG97478	Soybean	cytosol, plastid	62.55	56.87
KRH31415	Soybean	cytosol, plastid	62.98	56.81
KRG94414	Soybean	plastid	62.98	56.6
KRH14754	Soybean	cytosol, plastid	63.62	55.78
KRH73387	Soybean	cytosol, plastid	63.62	55.68
Bra031075.1-P	Field mustard	mitochondrion	37.23	55.38
KRH57624	Soybean	cytosol, mitochondrion	62.77	55.24
KRG94343	Soybean	cytosol, plastid	62.55	54.85
KRH52526	Soybean	cytosol	57.87	54.73
CDY67412	Canola	mitochondrion	37.45	54.32
KRH61853	Soybean	plastid	57.23	54.23
KRH05059	Soybean	cytosol, mitochondrion, plastid	56.17	53.66
KRH16045	Soybean	cytosol, mitochondrion, plastid	55.96	53.46
CDY35507	Canola	golgi	33.19	51.49
KRH03791	Soybean	cytosol	54.89	50.19
KRH56674	Soybean	cytosol	54.89	50.1
KRH36100	Soybean	plastid	38.09	39.17

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100798308	MapMan:18.4.24.1.2.3	EMBL:ACUP02002078	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_03G185200	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666
GO:GO:0050790	UniProt:I1JPR3	InterPro:IPR011989	EnsemblPlants:KRH67758	ProteinID:KRH67758	ProteinID:KRH67758.1
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371
UniParc:UPI0002339490	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:39713541..39720088

Molecular Weight (calculated)

53949.4 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.246

Length

470 amino acids

Sequence
(BLAST)

001: MFKRIMKGGQ KKPSKTDPSD PSPLAPAAAG AAAAPALVVP PPSGTIEPLP LFRDVAVSER QNLFIRKLQI CCHVLDFSDT LKSVREKEIK RQTLMELVDF
101: IQSGSGKITE TCQEEMIKMV SANVFRCLPP ASHENTGQEA TDPEEEEPCL EPAWPHLQLV YELLLRYVVS SDTDTKVAKR YIDHSFVLKL LDLFDSEDPR
201: EREYLKTILH RVYGKFMVHR PFIRKGINNI FFRFIYETER HSGIGELLEI LGSIINGFAL PMKEEHKLFL ARALLPLHKP KPVGVYHQQL SYCIAQFVEK
301: DYKLADTVIR GLLKYWPVTN CQKEVLFLGE LEEVLEATQT AEFQRCMVPL FRQVARCLNS SHFQVAERAL FLWNNEHIVS LIAQNRTVVL PIIFEALEKN
401: IKSHWNQAVH GLTVNVRKMF IEMDAELFEE CQRQYEEREA KAKELEEQRE LNWKRLADAA AQNGVDMVTA

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.