Factsheet for PGSC0003DMT400072691

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083920.1.1	Tomato	nucleus	97.15	97.15
KRH67758	Soybean	plastid	73.98	77.45
KRG96039	Soybean	cytosol, plastid	73.37	77.3
KRH32554	Soybean	cytosol	74.59	75.51
KRH19952	Soybean	cytosol	73.58	74.95
Bra029801.1-P	Field mustard	cytosol, plastid	73.78	74.69
CDY54611	Canola	cytosol	74.19	74.49
CDY41574	Canola	cytosol	73.78	74.39
VIT_08s0007g04850.t01	Wine grape	cytosol	75.61	74.1
Bra001296.1-P	Field mustard	cytosol, plastid	73.37	73.82
CDX73997	Canola	cytosol, plastid	72.97	73.42
AT3G09880.1	Thale cress	cytosol, plastid	73.78	72.75
CDY07942	Canola	cytosol, plastid	72.36	72.51
AT5G03470.1	Thale cress	cytosol	71.75	71.31
PGSC0003DMT400060086	Potato	cytosol, plastid	67.89	70.32
CDY04885	Canola	cytosol, plastid	66.06	67.43
CDY44370	Canola	cytosol, plastid	65.45	66.67
Bra028832.1-P	Field mustard	cytosol, plastid	65.24	66.6
PGSC0003DMT400045008	Potato	cytosol, plastid	58.54	57.37
PGSC0003DMT400052115	Potato	plastid	59.76	56.54
PGSC0003DMT400017950	Potato	plastid	60.16	56.49
PGSC0003DMT400001856	Potato	cytosol, mitochondrion, plastid	60.98	55.05
CDY08231	Canola	mitochondrion	37.4	54.6
Bra031075.1-P	Field mustard	mitochondrion	33.54	52.22
CDY67412	Canola	mitochondrion	33.74	51.23
PGSC0003DMT400067211	Potato	cytosol, plastid	51.22	50.6
PGSC0003DMT400034814	Potato	cytosol	21.54	50.24
CDY35507	Canola	golgi	29.67	48.18
PGSC0003DMT400002753	Potato	plastid	48.78	47.43
PGSC0003DMT400008785	Potato	cytosol	34.35	41.52

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102588732	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989
UniProt:M1CQS1	PFAM:PF01603	EnsemblPlantsGene:PGSC0003DMG400028284	PGSC:PGSC0003DMG400028284	EnsemblPlants:PGSC0003DMT400072691	PIRSF:PIRSF028043
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI0002949B72	RefSeq:XP_006339090.1
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2a, regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400028284]

Coordinates

chr10:+:55202370..55209488

Molecular Weight (calculated)

56944.7 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.311

Length

492 amino acids

Sequence
(BLAST)

001: MLKNIIKRGH KKVPKSEVSD FGHAPPAGGR NSGNVSTSDV VVNHASRGNM VTNSIQSQQI PSVMTSAAPA PGNIENLPLF RDVPISERQV LFFRKLQICC
101: FQFDFTDTMK LVREKEIKRQ TLVELVEYVQ SGAGKINENN QEEMARMISV NIFRCLPPAS HENTGSENVE QEEDEPCLEP SWPHLQLVYE LLLRYVVSSD
201: TDTKLAKRFI DHSFVLKLLD LFDSEDPRER EYLKTILHRV YGKFMVHRPF IRKGINNIFY RFIYETERHS GIGELLEILG SIINGFALPM KEEHKLFLVR
301: ALIPLHKPKT VAMYHQQLSY CIVQFVEKDY KLSDTVIRGL LKYWPVTNCQ KEVLFLQELE EVLETTQAAE FQRCMVPLFR QIARCLNSPH FQVAERALFL
401: WNNEHIVGLI AQNRNVIFPI IFDALQKNID NHWNQAIHGL TVNVRKMFME MDANLFDECQ RQYSEKAAQA TELEEQRELR WQRLAAAATQ GH

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.