Factsheet for PGSC0003DMT400045008

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014340.2.1	Tomato	cytosol	98.41	98.41
CDX98102	Canola	cytosol, plastid	68.92	74.73
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	75.7	73.79
AT1G13460.2	Thale cress	cytosol, plastid	70.52	71.95
Bra025178.1-P	Field mustard	cytosol, plastid	71.31	71.6
PGSC0003DMT400017950	Potato	plastid	74.5	71.37
Bra019720.1-P	Field mustard	plastid	69.32	70.59
CDY30030	Canola	plastid	69.72	70.56
PGSC0003DMT400052115	Potato	plastid	72.71	70.19
CDX83578	Canola	cytosol	66.73	69.5
KRH31415	Soybean	cytosol, plastid	72.11	69.48
KRG97478	Soybean	cytosol, plastid	70.92	68.86
Bra036352.1-P	Field mustard	cytosol, plastid	71.71	68.05
HORVU2Hr1G083850.1	Barley	cytosol	67.73	68.0
Os04t0485100-01	Rice	plasma membrane	68.92	67.98
Os08t0122000-01	Rice	plasma membrane	69.52	67.64
TraesCS2D01G341400.3	Wheat	mitochondrion	67.73	67.59
TraesCS2B01G362000.2	Wheat	cytosol, mitochondrion	67.53	67.4
TraesCS4A01G341600.1	Wheat	plastid	68.53	67.32
KXG26587	Sorghum	mitochondrion	68.33	67.25
TraesCS2A01G320700.2	Wheat	mitochondrion	67.33	67.2
HORVU5Hr1G120550.1	Barley	nucleus, plastid	68.33	67.12
TraesCS5D01G531300.1	Wheat	plastid	68.33	66.86
TraesCS5B01G533000.1	Wheat	plastid	68.33	66.86
TraesCS7D01G310200.1	Wheat	cytosol, plastid	68.73	66.73
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	68.73	66.73
EER93109	Sorghum	cytosol, plastid	68.73	66.47
Os03t0844500-01	Rice	cytosol	68.33	66.34
TraesCS7A01G313600.1	Wheat	nucleus	68.33	66.34
TraesCS7B01G214300.2	Wheat	nucleus	68.33	66.34
OQU79819	Sorghum	cytosol	69.32	65.78
Os07t0274800-02	Rice	extracellular, plasma membrane	67.13	65.18
CDY13605	Canola	cytosol, plastid	65.94	65.03
AT3G26020.4	Thale cress	cytosol, plastid	67.13	63.71
PGSC0003DMT400001856	Potato	cytosol, mitochondrion, plastid	68.53	63.12
OQU88848	Sorghum	cytosol	63.35	63.1
HORVU0Hr1G004960.2	Barley	cytosol	60.76	61.37
PGSC0003DMT400034814	Potato	cytosol	25.5	60.66
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	57.37	58.54
PGSC0003DMT400060086	Potato	cytosol, plastid	54.58	57.68
PGSC0003DMT400067211	Potato	cytosol, plastid	54.38	54.82
PGSC0003DMT400002753	Potato	plastid	50.8	50.4
PGSC0003DMT400008785	Potato	cytosol	32.87	40.54

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102590822	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:M1BGY8
PFAM:PF01603	EnsemblPlantsGene:PGSC0003DMG400017455	PGSC:PGSC0003DMG400017455	EnsemblPlants:PGSC0003DMT400045008	PIRSF:PIRSF028043	InterPro:PP2A_B56
PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI000295A795	RefSeq:XP_006341761.1	SEG:seg

Description

Protein phosphatase 2a, regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400017455]

Coordinates

chr5:-:11770224..11779784

Molecular Weight (calculated)

58107.5 Da

IEP (calculated)

8.946

GRAVY (calculated)

-0.312

Length

502 amino acids

Sequence
(BLAST)

001: MIKQIFGKKK QSKTAGSTSS KKSDGGSKKV GVSANTVISA PYSVSASTGD KFVRDGSLKL NGNLVAASYD ALPSFRDVPN AEKHNLFIRK LNMCCVLFDF
101: TDPTKNLKEK EIKRQTLLEL VEYVTSANVK FTEMVMQSVV KMVSTNLFRE LMPQPRENKT LAFDVEEDEP AMDPSWPHLQ IVYEFLLRFV ASPETDAKVA
201: KKYIDHSFVL RLLDLFDSED PREREYLKII LHRVYGKFMV HRPYIRKAIN NIFYRFVFET EKHNGIAELL EILGSIINGF ALPLKEEHKL FLVRTLIPLH
301: KPKCLAMYHQ QLTYCMTQFV EKDCKLADTV IRGLLKYWPV TNSSKEVMFL GELEEILEAT QPPDFQRCMV PLFRRIAQCL TSFHFQVAER ALFLWNNDHI
401: ENLIKQHRKV ILPIIFPALE RNARNHWNQA VHSLSLNIRK IFYDLDPELF KECLHKFQED ELKEDEIKSK REATWKRLEE LAAKNTTSNE AVLVPSSGHS
501: RT

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.