Factsheet for HORVU5Hr1G120550.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G341600.1	Wheat	plastid	97.65	97.65
TraesCS5B01G533000.1	Wheat	plastid	97.65	97.27
TraesCS5D01G531300.1	Wheat	plastid	97.46	97.08
Os03t0844500-01	Rice	cytosol	87.87	86.85
EER93109	Sorghum	cytosol, plastid	84.74	83.43
GSMUA_Achr8P08980_001	Banana	cytosol, mitochondrion	63.8	74.26
Zm00001d034817_P001	Maize	cytosol	82.97	71.38
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	56.56	71.18
CDX98102	Canola	cytosol, plastid	64.38	71.06
Solyc02g067980.2.1	Tomato	nucleus	71.82	70.04
GSMUA_Achr5P25450_001	Banana	cytosol, mitochondrion, nucleus, plastid	65.95	69.06
Solyc05g014340.2.1	Tomato	cytosol	67.32	68.53
AT1G13460.2	Thale cress	cytosol, plastid	65.95	68.5
GSMUA_Achr8P32030_001	Banana	cytosol	64.38	68.4
PGSC0003DMT400045008	Potato	cytosol, plastid	67.12	68.33
PGSC0003DMT400017950	Potato	plastid	70.06	68.32
PGSC0003DMT400052115	Potato	plastid	69.47	68.27
HORVU2Hr1G083850.1	Barley	cytosol	66.54	68.0
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	68.49	67.96
Solyc02g093800.2.1	Tomato	plastid	69.47	67.88
KRG94414	Soybean	plastid	69.08	67.5
GSMUA_AchrUn_...	Banana	cytosol	34.83	67.42
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	67.91	67.12
Bra025178.1-P	Field mustard	cytosol, plastid	65.56	67.0
Bra019720.1-P	Field mustard	plastid	64.58	66.94
CDY30030	Canola	plastid	64.97	66.94
KRH31415	Soybean	cytosol, plastid	68.1	66.79
KRH57624	Soybean	cytosol, mitochondrion	69.67	66.67
KRG97478	Soybean	cytosol, plastid	66.93	66.15
VIT_14s0219g00010.t01	Wine grape	cytosol	16.63	65.89
KRG94343	Soybean	cytosol, plastid	68.49	65.3
CDX83578	Canola	cytosol	61.06	64.73
Bra036352.1-P	Field mustard	cytosol, plastid	65.95	63.71
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	54.4	61.92
CDY13605	Canola	cytosol, plastid	60.67	60.9
HORVU0Hr1G004960.2	Barley	cytosol	58.71	60.36
AT3G26020.4	Thale cress	cytosol, plastid	61.84	59.74
PGSC0003DMT400034814	Potato	cytosol	23.68	57.35
HORVU3Hr1G022550.2	Barley	cytosol	41.88	55.44
CDY50168	Canola	cytosol	16.05	50.93
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	47.55	50.0
HORVU1Hr1G084450.3	Barley	plastid	52.84	43.83
HORVU5Hr1G084630.1	Barley	cytosol	31.31	34.26

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:HORVU5Hr1G120550	EnsemblPlants:HORVU5Hr1G120550.1
InterPro:IPR011989	UniProt:M0Y0I4	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257
PANTHER:PTHR10257:SF18	SUPFAM:SSF48371	UniParc:UPI000295C698	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:657808246..657815721

Molecular Weight (calculated)

58467.4 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.402

Length

511 amino acids

Sequence
(BLAST)

001: MIKQILGRFP KKPSKSGDKD PIGRSGPSAP NPPRGAERAS GHTPIISSSG LSYGSGQQPG NGNNSRVNNG NSSAFELLPG FKDVPNAEKN NLFVKKLNLC
101: CVTFDFSDPT KSMKEKEVKR QTLLELVDYV ASANQKFSEI VMHETTRMVS VNLFRTLTTP PRENNISAYD LDEDEPVMDP AWLHLQIVYE LFLRFIQSPE
201: TDAKLAKRYI DHSFVLRLLD LFDSEDPRER EYLKMILHRV YGKFMVHRPV IRKAINNTFY QFIYETEKHN GIAELLEILG SIINGFALPL KEEHKLFLIR
301: ALIPLHKPKC IAMYHQQLSY CITQFVEKDC KLSDTVIRGL LKYWPITNST KEVMFLGELE EILEATQPAE FQKCMVPLFR QIARCLNSSH FQVAERSLFL
401: WNNDHIESLI KQNSKVILPI IFPALERNSN GHWNQAVQSL TLNVRKLFSD HDAGLYTECL RKYEEAKAKE KENKLKQEAT WKRLEEIASS RATSGEAVLV
501: HRTLPRQSSA V

Best Arabidopsis Sequence Match ( AT4G15415.5 )
(BLAST)

001: MIKQIFGKLP RKPSKSSHND SNPNGEGGVN SYYIPNSGIS SISKPSSKSS ASNSNGANGT VIAPSSTSSN RTNQVNGVYE ALPSFRDVPT SEKPNLFIKK
101: LSMCCVVFDF NDPSKNLREK EIKRQTLLEL VDYIATVSTK LSDAAMQEIA KVAVVNLFRT FPSANHESKI LETLDVDDEE PALEPAWPHL QVVYELLLRF
201: VASPMTDAKL AKRYIDHSFV LKLLDLFDSE DQREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIFE TEKHNGIAEL LEILGSIING FALPLKEEHK
301: LFLIRALIPL HRPKCASAYH QQLSYCIVQF VEKDFKLADT VIRGLLKYWP VTNSSKEVMF LGELEEVLEA TQAAEFQRCM VPLFRQIARC LNSSHFQVAE
401: RALFLWNNDH IRNLITQNHK VIMPIVFPAM ERNTRGHWNQ AVQSLTLNVR KVMAETDQIL FDECLAKFQE DEANETEVVA KREATWKLLE ELAASKSVSN
501: EAVLVPRFSS SVTLATGKTS GS

Arabidopsis Description

B'GAMMASerine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8RW96]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.