Factsheet for PGSC0003DMT400060086

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04920.t01	Wine grape	plastid	67.58	71.02
GSMUA_Achr6P29780_001	Banana	mitochondrion	54.32	68.8
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	70.32	67.89
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	62.74	66.37
GSMUA_Achr7P07360_001	Banana	cytosol	57.68	66.02
GSMUA_Achr7P17010_001	Banana	mitochondrion	57.26	66.02
Bra003201.1-P	Field mustard	golgi	50.74	63.25
AT3G54930.2	Thale cress	cytosol, plastid	64.63	61.77
KXG37844	Sorghum	plastid	68.0	61.64
CDX67616	Canola	cytosol	62.95	61.15
TraesCS4B01G026300.1	Wheat	mitochondrion	66.32	61.05
CDY56962	Canola	cytosol, plastid	63.16	60.98
Bra007117.1-P	Field mustard	cytosol, plastid	63.16	60.98
CDY07514	Canola	cytosol	62.74	60.94
TraesCS4D01G023700.1	Wheat	mitochondrion	66.11	60.85
Zm00001d013544_P002	Maize	cytosol, plastid	66.74	60.61
Os03t0681800-00	Rice	plasma membrane	67.79	60.19
KRH35993	Soybean	cytosol	61.05	59.79
Zm00001d033370_P001	Maize	plastid	68.63	58.95
CDX73425	Canola	cytosol, plastid	63.58	56.24
PGSC0003DMT400017950	Potato	plastid	60.63	54.96
PGSC0003DMT400052115	Potato	plastid	60.0	54.81
PGSC0003DMT400045008	Potato	cytosol, plastid	57.68	54.58
PGSC0003DMT400001856	Potato	cytosol, mitochondrion, plastid	60.0	52.29
PGSC0003DMT400067211	Potato	cytosol, plastid	53.05	50.6
PGSC0003DMT400034814	Potato	cytosol	20.42	45.97
PGSC0003DMT400002753	Potato	plastid	48.0	45.06
PGSC0003DMT400008785	Potato	cytosol	36.0	42.01

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102600904	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989
UniProt:M1C568	PFAM:PF01603	EnsemblPlantsGene:PGSC0003DMG400023372	PGSC:PGSC0003DMG400023372	EnsemblPlants:PGSC0003DMT400060086	PIRSF:PIRSF028043
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI000295B5C0	RefSeq:XP_006345841.1
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2a, regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400023372]

Coordinates

chr5:-:51213086..51219839

Molecular Weight (calculated)

54855.6 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.221

Length

475 amino acids

Sequence
(BLAST)

001: MFKIIKRGKK SSKGDAVEPP IPSSLPNAPV DHASRIATSA VASQHVTLAN ATPDPSVVEV LPLLKEVALS ERHVLFIRKL QICCVQFDFS DTVKCARQKE
101: IKRQTLTELI DLVQSGSCKM NEIMQEELVR MISTNLFRCL PPASHENTGS EGIEEEDDMY LDPSWPHLQL VYELLLRYVM STEMDTKVAK RYLDHSFVLK
201: LLDLFDSEDP REREYLKTIL HRIYGKFMVH RPFIRNGINN VFYRFIFETE RHNGIGELLE ILGSVINGFA LPMKEEHKLF LVRALIPLHK PKCVSAYHHQ
301: LSYCITQFVE KDYRLADIVI RGLLKYWPIT NCGKEVLFLN ELEEVLEGTQ PAEFQRCLVP LFKQLGRSIN SPHFQVAERA LFLWNNEHIV DLIAQNRRAI
401: LPIIFEPLER NMYGHWNQAV HGLTSNVRRM FLEMDSELFE ECEKEYNEKA AGASSLVEQR ERAWKKLEEA ASMVG

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.