CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007117.1-P	Field mustard	cytosol, plastid	90.13	98.37
CDY56962	Canola	cytosol, plastid	90.13	98.37
CDX67616	Canola	cytosol	82.12	90.18
CDY07514	Canola	cytosol	82.12	90.18
AT3G54930.2	Thale cress	cytosol, plastid	83.43	90.14
GSMUA_Achr6P29780_001	Banana	mitochondrion	44.51	63.73
PGSC0003DMT400060086	Potato	cytosol, plastid	56.24	63.58
VIT_13s0019g04920.t01	Wine grape	plastid	53.07	63.05
CDY41574	Canola	cytosol	56.8	62.5
CDY54611	Canola	cytosol	56.98	62.45
CDX73997	Canola	cytosol, plastid	56.24	61.76
CDY07942	Canola	cytosol, plastid	55.87	61.1
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	51.02	61.02
GSMUA_Achr7P17010_001	Banana	mitochondrion	46.0	59.95
CDY04885	Canola	cytosol, plastid	53.63	59.75
CDY44370	Canola	cytosol, plastid	52.89	58.8
GSMUA_Achr7P07360_001	Banana	cytosol	45.25	58.55
TraesCS4D01G023700.1	Wheat	mitochondrion	54.56	56.78
TraesCS4B01G026300.1	Wheat	mitochondrion	54.38	56.59
KXG37844	Sorghum	plastid	54.38	55.73
CDX98102	Canola	cytosol, plastid	48.04	55.72
KRH35993	Soybean	cytosol	50.09	55.46
Zm00001d013544_P002	Maize	cytosol, plastid	53.63	55.07
Os03t0681800-00	Rice	plasma membrane	53.45	53.64
Zm00001d033370_P001	Maize	plastid	55.12	53.53
CDX87083	Canola	cytosol	35.01	53.41
CDY22925	Canola	plastid	48.98	53.24
CDY48287	Canola	plastid	49.16	53.23
CDY44320	Canola	cytosol, plastid	50.09	52.95
CDY38628	Canola	cytosol, mitochondrion	49.72	52.46
CDY30030	Canola	plastid	48.42	52.42
CDY09766	Canola	mitochondrion, plastid	45.07	52.04
CDX90593	Canola	cytosol, plastid	44.88	51.94
CDX83578	Canola	cytosol	45.81	51.04
CDY13606	Canola	cytosol	44.88	50.84
CDX83579	Canola	cytosol	44.69	50.53
CDY08231	Canola	mitochondrion	31.47	50.15
CDY13605	Canola	cytosol, plastid	45.81	48.33
CDY05497	Canola	mitochondrion, plastid	42.83	47.42
CDY54903	Canola	mitochondrion, plastid	42.64	47.12
CDY67412	Canola	mitochondrion	28.12	46.6
CDX80521	Canola	plastid	42.46	45.97
CDX88186	Canola	cytosol, plastid	41.9	45.45
CDY35507	Canola	golgi	24.95	44.22
CDY50168	Canola	cytosol	11.55	38.51
CDY04189	Canola	cytosol, golgi, nucleus	14.34	33.92
CDY40986	Canola	nucleus, plastid	43.95	24.74
CDX99733	Canola	nucleus, plastid	44.51	23.62

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078C9D4	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX73425
ProteinID:CDX73425	ProteinID:CDX73425.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008601
GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00108922001	InterPro:IPR011989	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF45	SUPFAM:SSF48371	UniParc:UPI0004EBDD83
SEG:seg	:	:	:	:	:

Description

BnaC08g25780D

Coordinates

chrLK031799:+:301164..303474

Molecular Weight (calculated)

62577.0 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.453

Length

537 amino acids

Sequence
(BLAST)

001: MFNKIKKLSQ KKFNKSDQHN QDNTSTNTNV VRSSRTTPTT ASPLPNGESQ TPAPSPSQTP NHPMFTSTPT LEVLPLLKDV SSSDRPLLFI KKAHMCSCQC
101: DFSDTLIMPR EKEIKRQTLL ELVDFLHSSS GKVNETMQSE LIRMVSANIF RSLPPAHYEN TGAPPEGNDP EEEEPYLEPW WPHLQLVYEL LLRYVVSSEI
201: EPKTAKKFIN HTFVSRLLDL FDSEDPRERE YLKTVLHRIY GKFIFHRPFI RCSVYNIFYK FLYETERCIG IGELLEILGS VINGFTVPMR EEHRLYLVKA
301: IMPLHKSKSI SVYHQQLSYC VVQFVEKDYK LADTVIRGLL KYWPLTNCNK EVLFLGELEE VLDVTEPSEF QHCVVPLFTQ IGKCLNSAHF QVAERALFLW
401: NNEHIVGLIA ENKDVIFPII FEALEKNMKG HWNQAVHGLS ENVRRMFMEM DNDLFEECEK QYQENEAKTW ELLEQREMTW KRLEEAASLR QQNSAVHLSG
501: FTPSHTTFNS TDRDIRNSIG ARRHRRNFTP LMQLWIR

Best Arabidopsis Sequence Match ( AT3G54930.2 )
(BLAST)

001: MFNKIIKLGQ KKFNKSDQHH QDNNNNNNNT STNTVVRGSR TTTPAPSSVS NGESQTTAQS PSQTPNHPMF TTTPILEVLP LLKDVSSSDR PLLFMKKAHM
101: CSCHCDFSDT LIMPREKEIK RQTLLELVDF LHSSSGKVNE TMQSELIRMV SANIFRCLPP AYHENTGAPP EGNDPEEEEP YLEPWWPHLQ LVYELLLRYV
201: VSSEIEPKTA KKFINHTFVS RLLDLFDSED PREREYLKTV LHRIYGKFIF HRPFIRCSIY NIFYKFLYET ERCIGIGELL EILGSVINGF TVPMREEHRL
301: YLVKAILPLH KSKGISIYHQ QLAYCVTQFV EKDYKLADTV IRGLLKFWPL TNCQKEVLFL GELEEVLDAT EPSEFQQCVV PLFTQIGKCL NSAHFQVAER
401: ALFLWNNEHI VGLIAQNKDV IFPIIFEALE RNMKGHWNQA VHGLSENVRR MFLEMDTELF EECEKQYLEN EAKACELLEQ RELTWKRLEE AASLAAN

Arabidopsis Description

B'EPSILONSerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform [Source:UniProtKB/Swiss-Prot;Acc:Q9SV41]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.