CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76805
CDX96609
CDY00357
CDY01339
CDY04592
CDY20324
CDY29485
CDY33663
CDY45582
CDY68667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26030.1	CDX96609	AT1G21010.1	21798944
AT3G26030.1	CDY00357	AT1G21010.1	21798944
AT3G26030.1	CDY01339	AT1G21010.1	21798944
AT3G26030.1	CDY04592	AT1G21010.1	21798944
AT3G26030.1	CDY29485	AT1G21010.1	21798944
AT3G26030.1	CDY33663	AT1G21010.1	21798944
AT3G26030.1	CDX76805	AT2G24550.1	21798944
AT3G26030.1	CDY20324	AT2G24550.1	21798944
AT3G26030.1	CDY45582	AT2G24550.1	21798944
AT3G26030.1	CDY68667	AT2G24550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13606	Canola	cytosol	97.47	97.68
AT3G26030.1	Thale cress	cytosol	91.37	90.99
CDX98102	Canola	cytosol, plastid	61.89	63.5
CDY30030	Canola	plastid	61.89	59.27
CDY44320	Canola	cytosol, plastid	62.74	58.66
CDY04189	Canola	cytosol, golgi, nucleus	28.0	58.59
CDY38628	Canola	cytosol, mitochondrion	62.53	58.35
CDY22925	Canola	plastid	59.79	57.49
CDY48287	Canola	plastid	59.79	57.26
CDX83578	Canola	cytosol	57.89	57.05
CDY09766	Canola	mitochondrion, plastid	55.79	56.99
CDX90593	Canola	cytosol, plastid	55.58	56.9
CDY41574	Canola	cytosol	57.26	55.74
CDX87083	Canola	cytosol	41.26	55.68
CDY54611	Canola	cytosol	57.05	55.31
CDX73997	Canola	cytosol, plastid	56.42	54.81
CDY07942	Canola	cytosol, plastid	56.63	54.79
CDY13605	Canola	cytosol, plastid	57.89	54.03
CDY04885	Canola	cytosol, plastid	52.84	52.07
CDY44370	Canola	cytosol, plastid	51.79	50.93
CDY54903	Canola	mitochondrion, plastid	51.16	50.0
CDY05497	Canola	mitochondrion, plastid	50.95	49.9
CDX80521	Canola	plastid	51.58	49.4
CDX88186	Canola	cytosol, plastid	50.74	48.69
CDX67616	Canola	cytosol	50.11	48.67
CDY56962	Canola	cytosol, plastid	50.32	48.58
CDY07514	Canola	cytosol	49.68	48.26
CDY50168	Canola	cytosol	16.0	47.2
CDY40986	Canola	nucleus, plastid	90.74	45.18
CDX73425	Canola	cytosol, plastid	50.53	44.69
CDX99733	Canola	nucleus, plastid	91.58	42.98
CDY08231	Canola	mitochondrion	30.32	42.73
CDY67412	Canola	mitochondrion	27.37	40.12
CDY35507	Canola	golgi	25.05	39.27

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078D5I9	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX83579
ProteinID:CDX83579	ProteinID:CDX83579.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008601
GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00139235001	InterPro:IPR011989	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI0004EE0794

Description

BnaC07g23190D

Coordinates

chrLK031833:+:813899..815916

Molecular Weight (calculated)

54797.8 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.412

Length

475 amino acids

Sequence
(BLAST)

001: MFKQILGKLP KKPSSAKFWD NGESQAPDNN NHEVLSQRSS SSNGDNLASL SVDVLPRLKD VSISEKQELF LKKLRLCCVV FDFAAEPQLN LKEKEIKRQT
101: LLEVVDYVIS SGNGKFPEPV IQEATRMVSA NLFSNPHQQQ WKNKTPPEAG DLEEQEEGSL NPSWPHLQIV YEFLLRIVAS PNTDAKISKK YIDHTFVLKL
201: LDLFDSEDPR EREYLKTILH RIYGRFMVHR PFIRKTMNNI LYDFILETGK HSGIAEFLEV LGSIINGFAL PLKEEHKLFL TRVLVPLHKL KCLPNYHQQL
301: SYCVIQFVEK DSKLADTVIK GLLKYWPVTN SSKEIMFLNE LEEILEATQL AEFERCMVPL SRQIAQCLSS SHFQVAERAL YLWNNDHVSN LVRHNNRIIL
401: PIVFPALEKN GSSHWNQAVK NLTENVLKVL SDTNPELFEE CLRKFQEDQQ NAEDNKKKNG ENWRQLEEIV ASMAK

Best Arabidopsis Sequence Match ( AT3G26030.1 )
(BLAST)

001: MFKQILGKLP KKTSAKFWDN GESQTLDNNN NQGGGDEVLS QRTSSNGDTS LDCVSSFDVL PRLRDVSISE KQELFLKKLR LCCLVFDFVA EPQQNFKEKE
101: IKRQTLLEVV DYVISSGNGK FPESVIQEAT KMISANLFSN PHRQWKNKTP EALDLEEEEG SLNPSWPHLQ IVYEFLLRIV ASPNTDPKIS KKYIDHTFVL
201: KLLDLFDSED PREREYLKTI LHRIYGRFMV HRPFIRKTMN NILYDFIFET GKHSGIAEFL EVLGSIINGF ALPLKEEHKL FLTRVLIPLH KLKCLPNYHQ
301: QLSYCVIQFV EKDCKLADTV IRGMLKYWPV TNSAKEIMFL NELEEILEAT QLTEFERCMV PLSRQIAQCL SSSHFQVAER ALYLWNNDHV TNLVRQNSRI
401: ILPIVFPALE KNGSSHWNQA VKNLTENVLK VLSDTNPDLF EECLHKFQED QQKAEDTKKK NGETWRQLEE IVASMAK

Arabidopsis Description

B'DELTASerine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.