Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016439.1-P | Field mustard | cytosol | 99.52 | 99.52 |
| CDY33663 | Canola | cytosol | 94.76 | 96.14 |
| CDY00357 | Canola | nucleus | 79.52 | 80.68 |
| CDY01339 | Canola | nucleus | 78.57 | 79.71 |
| AT1G21010.1 | Thale cress | cytosol | 78.57 | 78.57 |
| CDY29485 | Canola | plastid | 81.43 | 70.66 |
| CDY04592 | Canola | plastid | 80.0 | 69.71 |
| CDY20399 | Canola | nucleus, plastid | 63.81 | 62.91 |
| CDY45978 | Canola | nucleus | 63.33 | 62.74 |
| CDX85960 | Canola | cytosol | 59.52 | 60.1 |
| CDX68092 | Canola | cytosol, plastid | 60.0 | 60.0 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 45.71 | 50.26 |
| CDY06423 | Canola | cytosol | 35.71 | 46.58 |
| Solyc04g082960.1.1 | Tomato | cytosol | 41.43 | 46.52 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 41.43 | 44.39 |
| CDY45243 | Canola | cytosol | 24.76 | 37.14 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.57 | 36.45 |
| CDX76853 | Canola | cytosol | 28.1 | 35.98 |
| CDX89594 | Canola | cytosol | 27.62 | 35.58 |
| CDY39665 | Canola | cytosol | 27.62 | 35.58 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 29.05 | 35.26 |
| CDY42708 | Canola | nucleus | 28.57 | 35.09 |
| CDX72612 | Canola | nucleus | 28.1 | 34.5 |
| CDY46066 | Canola | cytosol | 26.67 | 34.36 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 28.1 | 34.1 |
| CDX77946 | Canola | cytosol | 23.81 | 33.78 |
| CDX75606 | Canola | nucleus | 28.1 | 33.71 |
| CDX81387 | Canola | cytosol | 24.29 | 32.9 |
| CDX73789 | Canola | cytosol | 23.81 | 32.68 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 28.57 | 32.61 |
| CDX69254 | Canola | cytosol | 27.62 | 32.58 |
| CDY55087 | Canola | cytosol | 23.33 | 32.45 |
| CDY18612 | Canola | cytosol | 23.81 | 32.26 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 23.81 | 32.05 |
| CDY28982 | Canola | nucleus | 23.33 | 31.41 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 27.62 | 31.18 |
| HORVU6Hr1G034380.1 | Barley | plastid | 28.1 | 30.89 |
| TraesCS6D01G158100.1 | Wheat | plastid | 27.14 | 30.81 |
| TraesCS6B01G196500.1 | Wheat | plastid | 27.62 | 30.53 |
| TraesCS6D01G158000.1 | Wheat | plastid | 27.62 | 30.37 |
| TraesCS6A01G168600.1 | Wheat | plastid | 28.57 | 30.3 |
| TraesCS6D01G157700.1 | Wheat | plastid | 28.1 | 30.1 |
| CDY28078 | Canola | cytosol | 22.86 | 30.0 |
| TraesCS6D01G157600.1 | Wheat | plastid | 27.14 | 30.0 |
| TraesCS6B01G196600.1 | Wheat | plastid | 27.62 | 29.59 |
| Os02t0193300-01 | Rice | mitochondrion | 26.67 | 29.17 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 23.81 | 28.57 |
| Os02t0193200-01 | Rice | mitochondrion | 26.67 | 28.0 |
| TraesCS7A01G394600.1 | Wheat | plastid | 24.76 | 26.53 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 24.29 | 26.02 |
| TraesCS7D01G390000.1 | Wheat | plastid | 23.81 | 25.51 |
| EES06442 | Sorghum | plastid | 24.76 | 25.49 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 25.24 | 25.36 |
| Zm00001d046687_P001 | Maize | plastid | 25.24 | 25.36 |
| TraesCS7B01G296600.1 | Wheat | plastid | 23.33 | 25.13 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 23.81 | 25.0 |
| TraesCS7B01G296700.1 | Wheat | plastid | 22.86 | 25.0 |
| Zm00001d036787_P001 | Maize | plastid | 25.71 | 24.88 |
| EER88673 | Sorghum | plastid | 27.14 | 24.78 |
| Zm00001d015867_P001 | Maize | plastid | 25.24 | 24.77 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 24.29 | 24.06 |
| OQU84553 | Sorghum | plastid | 22.86 | 23.65 |
| HORVU7Hr1G093080.1 | Barley | plastid | 23.33 | 23.22 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 21.9 | 21.9 |
| TraesCS7D01G390100.1 | Wheat | plastid | 23.33 | 20.5 |
Protein Annotations
| EnsemblPlants:CDX96609 | EnsemblPlantsGene:GSBRNA2T00102810001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| ProteinID:CDX96609 | ProteinID:CDX96609.1 | SEG:seg | UniParc:UPI0004EEDBCC | MapMan:35.2 | : |
Description
BnaA08g21520D
Coordinates
chrLK031895:-:234857..235511
Molecular Weight (calculated)
22841.3 Da
IEP (calculated)
10.864
GRAVY (calculated)
-0.317
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICVSLNRR DSNSPPTVKI VSVNGDLREY NVPVLASQVL EAESSAAAAA SSSYFICDSD SLHYDDFIPA VKSEEPLHAE QIYFVLPISK RRNRLTAPDM
101: AALAVKASVA IQNSVGKDFR RRKKGRISPI MTLTHQPNGS VAAVNGEASE STAVSKGRPL VKRTATYKAS SGYNRSGSVR NLRRHTSRRA KLAVRSFRLK
201: LSTIHEGSVV
101: AALAVKASVA IQNSVGKDFR RRKKGRISPI MTLTHQPNGS VAAVNGEASE STAVSKGRPL VKRTATYKAS SGYNRSGSVR NLRRHTSRRA KLAVRSFRLK
201: LSTIHEGSVV
001: MGICVSFRRE DSNSSPTVKI VTVNGDLREY NVPVIASQVL EAESAAAYSS SSSSRPSSYF ICDSDSLYYD DFIPAIKSEE PLQADQIYFV LPISKRQSRL
101: TASDMAALAV KASVAIQNSV KKESRRRKKV RISPVMMLTG SNDSVNGNGS ETTVKKGRPF VSKTAPVKAS SGINRSGSVR NLRRYTSKRA KLAVRSFRLK
201: LSTIYEGSVV
101: TASDMAALAV KASVAIQNSV KKESRRRKKV RISPVMMLTG SNDSVNGNGS ETTVKKGRPF VSKTAPVKAS SGINRSGSVR NLRRYTSKRA KLAVRSFRLK
201: LSTIYEGSVV
Arabidopsis Description
At1g21010 [Source:UniProtKB/TrEMBL;Acc:Q7XJ58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.