Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046687_P001 | Maize | plastid | 70.97 | 73.68 |
| EER88673 | Sorghum | plastid | 72.35 | 68.26 |
| TraesCS7A01G394600.1 | Wheat | plastid | 52.53 | 58.16 |
| TraesCS7B01G296700.1 | Wheat | plastid | 51.15 | 57.81 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 53.0 | 57.5 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 51.61 | 57.14 |
| TraesCS7B01G296600.1 | Wheat | plastid | 50.23 | 55.9 |
| TraesCS7D01G390000.1 | Wheat | plastid | 50.23 | 55.61 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 52.53 | 53.77 |
| HORVU7Hr1G093080.1 | Barley | plastid | 49.77 | 51.18 |
| TraesCS7D01G390100.1 | Wheat | plastid | 52.53 | 47.7 |
| Zm00001d015867_P001 | Maize | plastid | 45.62 | 46.26 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 30.88 | 36.41 |
| Zm00001d013311_P001 | Maize | plastid | 23.96 | 32.5 |
| Zm00001d033943_P001 | Maize | plastid | 22.58 | 29.52 |
| Zm00001d034190_P001 | Maize | cytosol | 24.42 | 29.12 |
| Zm00001d007974_P001 | Maize | nucleus | 25.81 | 29.02 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 25.35 | 28.8 |
| Zm00001d020967_P001 | Maize | plastid | 30.88 | 28.63 |
| Zm00001d013178_P001 | Maize | cytosol | 24.42 | 28.49 |
| Solyc04g082960.1.1 | Tomato | cytosol | 24.42 | 28.34 |
| Zm00001d020968_P001 | Maize | plastid | 29.49 | 28.19 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 25.35 | 28.06 |
| AT1G76600.1 | Thale cress | nucleus | 27.19 | 27.31 |
| Zm00001d018717_P001 | Maize | cytosol | 23.96 | 26.8 |
| CDY33663 | Canola | cytosol | 25.35 | 26.57 |
| CDY20399 | Canola | nucleus, plastid | 25.35 | 25.82 |
| Bra016439.1-P | Field mustard | cytosol | 24.88 | 25.71 |
| AT1G21010.1 | Thale cress | cytosol | 24.88 | 25.71 |
| CDX96609 | Canola | cytosol | 24.88 | 25.71 |
| CDX85960 | Canola | cytosol | 24.42 | 25.48 |
| Bra008267.1-P | Field mustard | nucleus | 24.88 | 25.47 |
| CDY45978 | Canola | nucleus | 24.88 | 25.47 |
| CDY01339 | Canola | nucleus | 23.96 | 25.12 |
| Bra025866.1-P | Field mustard | cytosol | 24.42 | 25.0 |
| Bra003714.1-P | Field mustard | cytosol | 23.96 | 24.76 |
| CDX68092 | Canola | cytosol, plastid | 23.96 | 24.76 |
| Bra012264.1-P | Field mustard | cytosol | 23.04 | 24.15 |
| CDY00357 | Canola | nucleus | 22.58 | 23.67 |
| CDY04592 | Canola | plastid | 24.88 | 22.41 |
| CDY06423 | Canola | cytosol | 16.59 | 22.36 |
| CDY29485 | Canola | plastid | 24.42 | 21.9 |
Protein Annotations
| EMBL:EU953615 | EnsemblPlants:Zm00001d036787_P001 | EnsemblPlants:Zm00001d036787_T001 | EnsemblPlantsGene:Zm00001d036787 | EntrezGene:100286244 | InterPro:DUF4228_plant |
| PANTHER:PTHR33052 | PANTHER:PTHR33052:SF11 | PFAM:PF14009 | ProteinID:AQK81941.1 | SEG:seg | UniParc:UPI000182B19E |
| UniProt:B6SLK0 | MapMan:35.2 | : | : | : | : |
Description
TMV response protein%3B TMV response-related protein
Coordinates
chr6:-:100878714..100879367
Molecular Weight (calculated)
22099.1 Da
IEP (calculated)
9.192
GRAVY (calculated)
-0.095
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGLSSSHH RSSGASSSLH QPPAAAPALV VAADGSLREF VTPAAAPLLL PVSVSDVLGA NADDDGGRYF VCSSSALYFE TDVPALGASE LLRPGQVYFV
101: LPAAMLGRPL SGADMAALAV RASQALAAGA RPPRGGRRPR GSTRARVVPA AAAHHAHAHG DEEAVNEKLN QRTLGGFETA PPRGPARKPA VAARPAPPVT
201: VTVTERRALS TIEEGAE
101: LPAAMLGRPL SGADMAALAV RASQALAAGA RPPRGGRRPR GSTRARVVPA AAAHHAHAHG DEEAVNEKLN QRTLGGFETA PPRGPARKPA VAARPAPPVT
201: VTVTERRALS TIEEGAE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.