Factsheet for Zm00001d020967_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89709	Sorghum	plastid	70.94	72.81
HORVU5Hr1G074010.1	Barley	plastid	44.02	55.98
TraesCS5D01G278000.1	Wheat	plastid	46.15	55.96
TraesCS5B01G270300.1	Wheat	plastid	45.3	54.64
TraesCS5A01G269900.1	Wheat	plastid	44.87	54.4
TraesCS5D01G278100.1	Wheat	plastid	45.73	49.31
TraesCS5A01G270000.1	Wheat	plastid	45.3	48.85
TraesCS5B01G270500.1	Wheat	plastid	44.44	48.15
TraesCS5D01G278200.1	Wheat	plastid	45.3	47.96
TraesCS5B01G270600.1	Wheat	plastid	45.3	47.96
TraesCS5A01G270100.1	Wheat	plastid	45.3	47.96
HORVU5Hr1G074030.1	Barley	cytosol, mitochondrion	45.3	45.3
HORVU5Hr1G074020.1	Barley	nucleus	44.02	42.74
Os09t0492900-00	Rice	cytosol, mitochondrion, nucleus, plastid	32.05	40.98
Zm00001d020968_P001	Maize	plastid	39.32	40.53
Zm00001d013311_P001	Maize	plastid	26.92	39.38
Zm00001d033943_P001	Maize	plastid	26.07	36.75
Zm00001d034190_P001	Maize	cytosol	25.21	32.42
Zm00001d046687_P001	Maize	plastid	28.21	31.58
Zm00001d018717_P001	Maize	cytosol	26.07	31.44
Zm00001d036787_P001	Maize	plastid	28.63	30.88
Zm00001d013178_P001	Maize	cytosol	24.36	30.65
Zm00001d007974_P001	Maize	nucleus	24.36	29.53
Zm00001d015867_P001	Maize	plastid	26.5	28.97
Solyc01g109250.2.1	Tomato	extracellular	18.38	28.67
KRH24527	Soybean	cytosol	17.09	27.97
KRH29531	Soybean	cytosol	17.09	27.78
PGSC0003DMT400064780	Potato	extracellular	18.38	27.74
KRH76905	Soybean	plastid	13.68	21.92
KRH28563	Soybean	plastid	13.25	21.09
VIT_03s0063g01950.t01	Wine grape	plastid	16.67	19.8
Os09t0493000-01	Rice	plastid	10.26	11.94

Protein Annotations

EnsemblPlants:Zm00001d020967_P001	EnsemblPlants:Zm00001d020967_T001	EnsemblPlantsGene:Zm00001d020967	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF15
PFAM:PF14009	ProteinID:ONM55964.1	SEG:seg	UniParc:UPI000844C18F	UniProt:A0A1D6I7C3	MapMan:35.2

Description

TMV response-related protein

Coordinates

chr7:+:138148362..138149066

Molecular Weight (calculated)

23801.4 Da

IEP (calculated)

11.511

GRAVY (calculated)

-0.275

Length

234 amino acids

Sequence
(BLAST)

001: MGAACVSFSR SPQASPAAEP SQRAAAATVK VVNLDGSMAR LAVAGTVVTA REALAAGGRR HRTLPPPPLF LCSADELGFD APPRALAADE ALQPGQLYLV
101: LPDSALRRPL TAKDMAALAV KAATALAAEA GLAAGLSPGR DSRGGTPAGK RPRRQSAARV APLLVAVSKE SSPPPPGDGA ARKNDVHRGY AARPAGQDGG
201: RAAGKTRKGA SYRARGSRHR AVVQRLSAIS EDGE

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.