Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88673 | Sorghum | plastid | 80.38 | 73.04 |
| Zm00001d036787_P001 | Maize | plastid | 73.68 | 70.97 |
| TraesCS7A01G394600.1 | Wheat | plastid | 60.29 | 64.29 |
| TraesCS7B01G296700.1 | Wheat | plastid | 56.94 | 61.98 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 57.89 | 61.73 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 58.85 | 61.5 |
| TraesCS7D01G390000.1 | Wheat | plastid | 56.46 | 60.2 |
| TraesCS7B01G296600.1 | Wheat | plastid | 55.98 | 60.0 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 59.33 | 58.49 |
| HORVU7Hr1G093080.1 | Barley | plastid | 54.55 | 54.03 |
| TraesCS7D01G390100.1 | Wheat | plastid | 56.46 | 49.37 |
| Zm00001d015867_P001 | Maize | plastid | 50.24 | 49.07 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 32.06 | 36.41 |
| Zm00001d013311_P001 | Maize | plastid | 25.36 | 33.12 |
| Zm00001d033943_P001 | Maize | plastid | 24.4 | 30.72 |
| Zm00001d034190_P001 | Maize | cytosol | 25.84 | 29.67 |
| Zm00001d020968_P001 | Maize | plastid | 32.06 | 29.52 |
| Zm00001d007974_P001 | Maize | nucleus | 26.79 | 29.02 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 26.32 | 28.8 |
| Zm00001d013178_P001 | Maize | cytosol | 25.36 | 28.49 |
| Zm00001d020967_P001 | Maize | plastid | 31.58 | 28.21 |
| Solyc04g082960.1.1 | Tomato | cytosol | 24.88 | 27.81 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 25.84 | 27.55 |
| Zm00001d018717_P001 | Maize | cytosol | 25.36 | 27.32 |
| AT1G76600.1 | Thale cress | nucleus | 27.27 | 26.39 |
| CDY33663 | Canola | cytosol | 25.84 | 26.09 |
| CDX85960 | Canola | cytosol | 25.36 | 25.48 |
| Bra016439.1-P | Field mustard | cytosol | 25.36 | 25.24 |
| AT1G21010.1 | Thale cress | cytosol | 25.36 | 25.24 |
| CDX96609 | Canola | cytosol | 25.36 | 25.24 |
| CDY00357 | Canola | nucleus | 24.88 | 25.12 |
| CDY01339 | Canola | nucleus | 24.88 | 25.12 |
| Bra025866.1-P | Field mustard | cytosol | 25.36 | 25.0 |
| CDY20399 | Canola | nucleus, plastid | 25.36 | 24.88 |
| Bra003714.1-P | Field mustard | cytosol | 24.88 | 24.76 |
| Bra012264.1-P | Field mustard | cytosol | 24.4 | 24.64 |
| Bra008267.1-P | Field mustard | nucleus | 24.88 | 24.53 |
| CDY45978 | Canola | nucleus | 24.88 | 24.53 |
| CDX68092 | Canola | cytosol, plastid | 24.4 | 24.29 |
| CDY04592 | Canola | plastid | 25.84 | 22.41 |
| CDY29485 | Canola | plastid | 25.36 | 21.9 |
| CDY06423 | Canola | cytosol | 16.75 | 21.74 |
Protein Annotations
| EnsemblPlants:Zm00001d046687_P001 | EnsemblPlants:Zm00001d046687_T001 | EnsemblPlantsGene:Zm00001d046687 | EntrezGene:100284996 | InterPro:DUF4228_plant | PANTHER:PTHR33052 |
| PANTHER:PTHR33052:SF11 | PFAM:PF14009 | ProteinID:AQL04856.1 | SEG:seg | UniParc:UPI000221F32B | UniProt:K7WAW8 |
| MapMan:35.2 | : | : | : | : | : |
Description
TMV response protein
Coordinates
chr9:-:102392653..102393282
Molecular Weight (calculated)
21543.5 Da
IEP (calculated)
10.881
GRAVY (calculated)
-0.181
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSGLSSSHR RSSASLHQPA AAPAPAPALV IAADGSLREF APAPLPASVS DALAGANAAA DGRFFVCSSD ALCFDSDVPA LGADELLRPG QIYFVLPAAM
101: LGRPLSSAGM AALAARASEA LAAGAGWRGR PRGRRGFTKA RVVPAHHRHA DGDREVNEKL NQRTLGGIET ASRGPATNAR KSAVAARPAP PLRRALSTIE
201: EDAERSNWL
101: LGRPLSSAGM AALAARASEA LAAGAGWRGR PRGRRGFTKA RVVPAHHRHA DGDREVNEKL NQRTLGGIET ASRGPATNAR KSAVAARPAP PLRRALSTIE
201: EDAERSNWL
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.