Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76600.1 | CDX83579 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDX99733 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY13606 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY40986 | AT3G26030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85960 | Canola | cytosol | 69.57 | 53.85 |
| CDX68092 | Canola | cytosol, plastid | 69.57 | 53.33 |
| CDY45978 | Canola | nucleus | 62.11 | 47.17 |
| CDY20399 | Canola | nucleus, plastid | 62.11 | 46.95 |
| AT1G76600.1 | Thale cress | nucleus | 58.39 | 43.52 |
| CDY01339 | Canola | nucleus | 49.69 | 38.65 |
| CDY00357 | Canola | nucleus | 49.07 | 38.16 |
| CDX96609 | Canola | cytosol | 46.58 | 35.71 |
| CDY04592 | Canola | plastid | 53.42 | 35.68 |
| CDY29485 | Canola | plastid | 53.42 | 35.54 |
| CDY33663 | Canola | cytosol | 45.34 | 35.27 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 37.27 | 31.41 |
| Solyc04g082960.1.1 | Tomato | cytosol | 32.92 | 28.34 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 34.16 | 28.06 |
| CDX76853 | Canola | cytosol | 25.47 | 25.0 |
| TraesCS6D01G158200.1 | Wheat | plastid | 16.15 | 24.3 |
| CDY45243 | Canola | cytosol | 20.5 | 23.57 |
| CDX89594 | Canola | cytosol | 22.98 | 22.7 |
| CDY46066 | Canola | cytosol | 22.98 | 22.7 |
| CDY39665 | Canola | cytosol | 22.98 | 22.7 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 24.84 | 21.74 |
| TraesCS7B01G296600.1 | Wheat | plastid | 25.47 | 21.03 |
| CDX77946 | Canola | cytosol | 19.25 | 20.95 |
| TraesCS7D01G390000.1 | Wheat | plastid | 25.47 | 20.92 |
| Os02t0193300-01 | Rice | mitochondrion | 24.84 | 20.83 |
| TraesCS7A01G394600.1 | Wheat | plastid | 24.84 | 20.41 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 24.84 | 20.41 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 21.74 | 20.23 |
| TraesCS6B01G196500.1 | Wheat | plastid | 23.6 | 20.0 |
| Os02t0193200-01 | Rice | mitochondrion | 24.84 | 20.0 |
| CDX81387 | Canola | cytosol | 19.25 | 20.0 |
| TraesCS6D01G158100.1 | Wheat | plastid | 22.98 | 20.0 |
| TraesCS6D01G158000.1 | Wheat | plastid | 23.6 | 19.9 |
| HORVU6Hr1G034380.1 | Barley | plastid | 23.6 | 19.9 |
| CDY42708 | Canola | nucleus | 21.12 | 19.88 |
| CDY55087 | Canola | cytosol | 18.63 | 19.87 |
| TraesCS6A01G168600.1 | Wheat | plastid | 24.22 | 19.7 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 21.12 | 19.65 |
| CDX73789 | Canola | cytosol | 18.63 | 19.61 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 24.22 | 19.5 |
| TraesCS6D01G157600.1 | Wheat | plastid | 22.98 | 19.47 |
| TraesCS6D01G157700.1 | Wheat | plastid | 23.6 | 19.39 |
| TraesCS6B01G196600.1 | Wheat | plastid | 23.6 | 19.39 |
| CDY18612 | Canola | cytosol | 18.63 | 19.35 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 22.36 | 19.35 |
| CDX72612 | Canola | nucleus | 20.5 | 19.3 |
| TraesCS7B01G296700.1 | Wheat | plastid | 22.98 | 19.27 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 18.63 | 19.23 |
| EES06442 | Sorghum | plastid | 24.22 | 19.12 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 24.84 | 18.87 |
| CDY28078 | Canola | cytosol | 18.63 | 18.75 |
| CDY28982 | Canola | nucleus | 18.01 | 18.59 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 19.88 | 18.29 |
| Zm00001d015867_P001 | Maize | plastid | 24.22 | 18.22 |
| CDX75606 | Canola | nucleus | 19.25 | 17.71 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 22.98 | 17.62 |
| HORVU7Hr1G093080.1 | Barley | plastid | 22.98 | 17.54 |
| CDX69254 | Canola | cytosol | 19.25 | 17.42 |
| OQU84553 | Sorghum | plastid | 21.74 | 17.24 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 22.36 | 17.22 |
| Zm00001d046687_P001 | Maize | plastid | 21.74 | 16.75 |
| Zm00001d036787_P001 | Maize | plastid | 22.36 | 16.59 |
| EER88673 | Sorghum | plastid | 23.6 | 16.52 |
| TraesCS7D01G390100.1 | Wheat | plastid | 23.6 | 15.9 |
Protein Annotations
| EnsemblPlants:CDY06423 | EnsemblPlantsGene:GSBRNA2T00122415001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| ProteinID:CDY06423 | ProteinID:CDY06423.1 | UniParc:UPI0004EC66BD | MapMan:35.2 | : | : |
Description
BnaC05g31070D
Coordinates
chrLK031969:-:663420..663955
Molecular Weight (calculated)
18185.9 Da
IEP (calculated)
10.334
GRAVY (calculated)
-0.578
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSRPSS YFLCNSDSLY YDDFIPAIEP EEILKADQIY FVLPVSKRHY RLTASDMAAL AVKASVAMEK AVKNKNRRRK SGRISPVTMM NQPNERIVAV
101: NRSSSTMMMQ KGNLQNKTTQ SEKICVWESQ EDCDKLAVPL AFIQKKQRSK RGIRGNGSEV K
101: NRSSSTMMMQ KGNLQNKTTQ SEKICVWESQ EDCDKLAVPL AFIQKKQRSK RGIRGNGSEV K
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.