Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G157600.1 | Wheat | plastid | 97.37 | 97.37 |
| TraesCS6D01G158100.1 | Wheat | plastid | 93.68 | 96.22 |
| HORVU6Hr1G034380.1 | Barley | plastid | 89.47 | 89.01 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 76.84 | 83.43 |
| TraesCS6B01G196600.1 | Wheat | plastid | 78.95 | 76.53 |
| Os02t0193300-01 | Rice | mitochondrion | 64.74 | 64.06 |
| Os02t0193200-01 | Rice | mitochondrion | 66.32 | 63.0 |
| Zm00001d015867_P001 | Maize | plastid | 66.32 | 58.88 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 64.21 | 58.1 |
| OQU84553 | Sorghum | plastid | 54.21 | 50.74 |
| TraesCS7B01G296700.1 | Wheat | plastid | 50.53 | 50.0 |
| TraesCS7B01G296600.1 | Wheat | plastid | 51.05 | 49.74 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 34.21 | 35.33 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 30.53 | 33.92 |
| TraesCS5B01G270300.1 | Wheat | plastid | 33.16 | 32.47 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 32.11 | 31.94 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 30.53 | 31.52 |
| TraesCS5B01G383500.1 | Wheat | plastid | 28.42 | 31.4 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 28.42 | 30.68 |
| Solyc04g082960.1.1 | Tomato | cytosol | 30.0 | 30.48 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 30.0 | 30.32 |
| TraesCS5B01G270500.1 | Wheat | plastid | 33.16 | 29.17 |
| TraesCS5B01G270600.1 | Wheat | plastid | 33.68 | 28.96 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 28.42 | 28.72 |
| AT1G76600.1 | Thale cress | nucleus | 32.63 | 28.7 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 29.47 | 28.57 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 27.37 | 28.11 |
| CDY33663 | Canola | cytosol | 30.53 | 28.02 |
| Bra016439.1-P | Field mustard | cytosol | 30.53 | 27.62 |
| CDX96609 | Canola | cytosol | 30.53 | 27.62 |
| AT1G21010.1 | Thale cress | cytosol | 30.53 | 27.62 |
| CDY45978 | Canola | nucleus | 30.0 | 26.89 |
| Bra008267.1-P | Field mustard | nucleus | 30.0 | 26.89 |
| CDY20399 | Canola | nucleus, plastid | 30.0 | 26.76 |
| CDX68092 | Canola | cytosol, plastid | 29.47 | 26.67 |
| Bra003714.1-P | Field mustard | cytosol | 29.47 | 26.67 |
| Bra025866.1-P | Field mustard | cytosol | 29.47 | 26.42 |
| CDY01339 | Canola | nucleus | 28.42 | 26.09 |
| CDX85960 | Canola | cytosol | 28.42 | 25.96 |
| CDY00357 | Canola | nucleus | 27.37 | 25.12 |
| Bra012264.1-P | Field mustard | cytosol | 26.84 | 24.64 |
| CDY06423 | Canola | cytosol | 20.0 | 23.6 |
| CDY04592 | Canola | plastid | 29.47 | 23.24 |
| CDY29485 | Canola | plastid | 29.47 | 23.14 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G196500.1 | EnsemblPlantsGene:TraesCS6B01G196500 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF25 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:233013897..233014469
Molecular Weight (calculated)
20268.3 Da
IEP (calculated)
8.495
GRAVY (calculated)
-0.134
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAKISCSSI HRGTLSQQPH HPAPVRVIAA DGSLKELPAS PRVAVSDVLA GEAASFFVCN SDALYFNEPP PALASDELLR PGQIYFLLPA AELGRPLSSA
101: DMAALAVRAS AAIAAKSPEQ RGGKKNLRVV PVREEVEDCE DVMFNEKLNE RTLGEFAVSL SPAKKNNGKL AARSRLRLKR ALSIIQEAAD
101: DMAALAVRAS AAIAAKSPEQ RGGKKNLRVV PVREEVEDCE DVMFNEKLNE RTLGEFAVSL SPAKKNNGKL AARSRLRLKR ALSIIQEAAD
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.