Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76600.1 | CDX83579 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDX99733 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY13606 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY40986 | AT3G26030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68092 | Canola | cytosol, plastid | 94.71 | 93.81 |
| CDY45978 | Canola | nucleus | 83.17 | 81.6 |
| CDY20399 | Canola | nucleus, plastid | 83.17 | 81.22 |
| AT1G76600.1 | Thale cress | nucleus | 73.08 | 70.37 |
| CDY06423 | Canola | cytosol | 53.85 | 69.57 |
| CDY01339 | Canola | nucleus | 62.98 | 63.28 |
| CDY00357 | Canola | nucleus | 61.54 | 61.84 |
| CDX96609 | Canola | cytosol | 60.1 | 59.52 |
| CDY33663 | Canola | cytosol | 59.13 | 59.42 |
| CDY04592 | Canola | plastid | 67.79 | 58.51 |
| CDY29485 | Canola | plastid | 65.38 | 56.2 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 46.15 | 50.26 |
| Solyc04g082960.1.1 | Tomato | cytosol | 40.38 | 44.92 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 42.31 | 44.9 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.75 | 36.45 |
| CDX76853 | Canola | cytosol | 28.37 | 35.98 |
| CDY45243 | Canola | cytosol | 24.04 | 35.71 |
| CDX89594 | Canola | cytosol | 26.92 | 34.36 |
| CDY39665 | Canola | cytosol | 26.92 | 34.36 |
| CDY46066 | Canola | cytosol | 26.44 | 33.74 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 29.33 | 33.15 |
| CDX77946 | Canola | cytosol | 23.56 | 33.11 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 26.44 | 31.79 |
| CDY55087 | Canola | cytosol | 23.08 | 31.79 |
| CDX81387 | Canola | cytosol | 23.56 | 31.61 |
| CDY42708 | Canola | nucleus | 25.96 | 31.58 |
| CDX73789 | Canola | cytosol | 23.08 | 31.37 |
| CDX72612 | Canola | nucleus | 25.48 | 30.99 |
| CDY18612 | Canola | cytosol | 23.08 | 30.97 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 23.08 | 30.77 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 25.48 | 30.64 |
| Os02t0193300-01 | Rice | mitochondrion | 27.88 | 30.21 |
| CDY28982 | Canola | nucleus | 22.6 | 30.13 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 27.88 | 29.59 |
| TraesCS7D01G390000.1 | Wheat | plastid | 27.88 | 29.59 |
| CDY28078 | Canola | cytosol | 22.6 | 29.38 |
| TraesCS7A01G394600.1 | Wheat | plastid | 27.4 | 29.08 |
| Os02t0193200-01 | Rice | mitochondrion | 27.88 | 29.0 |
| TraesCS6D01G158100.1 | Wheat | plastid | 25.48 | 28.65 |
| TraesCS7B01G296700.1 | Wheat | plastid | 26.44 | 28.65 |
| CDX75606 | Canola | nucleus | 24.04 | 28.57 |
| TraesCS6B01G196500.1 | Wheat | plastid | 25.96 | 28.42 |
| TraesCS6A01G168600.1 | Wheat | plastid | 26.92 | 28.28 |
| HORVU6Hr1G034380.1 | Barley | plastid | 25.96 | 28.27 |
| TraesCS7B01G296600.1 | Wheat | plastid | 26.44 | 28.21 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 26.92 | 28.0 |
| TraesCS6D01G157600.1 | Wheat | plastid | 25.48 | 27.89 |
| TraesCS6D01G158000.1 | Wheat | plastid | 25.48 | 27.75 |
| TraesCS6B01G196600.1 | Wheat | plastid | 25.96 | 27.55 |
| TraesCS6D01G157700.1 | Wheat | plastid | 25.96 | 27.55 |
| CDX69254 | Canola | cytosol | 23.56 | 27.53 |
| EES06442 | Sorghum | plastid | 26.92 | 27.45 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 24.52 | 27.42 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 26.92 | 26.42 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 22.12 | 26.29 |
| HORVU7Hr1G093080.1 | Barley | plastid | 25.96 | 25.59 |
| Zm00001d046687_P001 | Maize | plastid | 25.48 | 25.36 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 25.0 | 24.88 |
| Zm00001d015867_P001 | Maize | plastid | 25.48 | 24.77 |
| OQU84553 | Sorghum | plastid | 24.04 | 24.63 |
| Zm00001d036787_P001 | Maize | plastid | 25.48 | 24.42 |
| EER88673 | Sorghum | plastid | 26.92 | 24.35 |
| TraesCS7D01G390100.1 | Wheat | plastid | 26.44 | 23.01 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 21.63 | 21.43 |
Protein Annotations
| EnsemblPlants:CDX85960 | EnsemblPlantsGene:GSBRNA2T00143809001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| ProteinID:CDX85960 | ProteinID:CDX85960.1 | SEG:seg | UniParc:UPI0004EEB408 | MapMan:35.2 | : |
Description
BnaC06g21740D
Coordinates
chrLK031843:+:1119787..1120413
Molecular Weight (calculated)
22993.6 Da
IEP (calculated)
10.293
GRAVY (calculated)
-0.360
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSVGRS DCDSSPAAKI VTVNGDLREY NVPVLASQVL EAESMASSSS RPSSYFLCNS DSLYYDDFIP AIEPEEILQA DQIYFVLPVS KRQYRLTASD
101: MAALAVKASV AMEKAAKNKN RRRKSGRISP VMMMNQPNER LVVVNRSSTM VQKGNLPNKT TQFKSTSTIG YSRSGSVQQL KRYASGRARK LAARSIKRLS
201: TIHEENIL
101: MAALAVKASV AMEKAAKNKN RRRKSGRISP VMMMNQPNER LVVVNRSSTM VQKGNLPNKT TQFKSTSTIG YSRSGSVQQL KRYASGRARK LAARSIKRLS
201: TIHEENIL
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.