CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015867_P001	Maize	plastid	80.88	77.1
Os02t0193300-01	Rice	mitochondrion	60.78	64.58
Os02t0193200-01	Rice	mitochondrion	63.24	64.5
OQU84553	Sorghum	plastid	51.96	52.22
EER88673	Sorghum	plastid	49.51	43.91
GSMUA_Achr9P12270_001	Banana	cytosol	32.84	36.41
EER93387	Sorghum	cytosol	30.39	32.98
OQU89709	Sorghum	plastid	35.29	31.58
VIT_18s0122g00300.t01	Wine grape	plastid	29.41	31.41
KXG37596	Sorghum	cytosol, nucleus, plastid	24.02	29.34
Solyc04g082960.1.1	Tomato	cytosol	25.98	28.34
Bra003714.1-P	Field mustard	cytosol	27.94	27.14
CDX85960	Canola	cytosol	27.45	26.92
CDX68092	Canola	cytosol, plastid	27.45	26.67
PGSC0003DMT400025724	Potato	cytosol, plastid	25.49	26.53
EER96983	Sorghum	cytosol	29.9	26.29
AT1G21010.1	Thale cress	cytosol	26.96	26.19
CDY33663	Canola	cytosol	25.98	25.6
CDY45978	Canola	nucleus	26.47	25.47
Bra025866.1-P	Field mustard	cytosol	26.47	25.47
Bra008267.1-P	Field mustard	nucleus	26.47	25.47
CDY20399	Canola	nucleus, plastid	26.47	25.35
CDX96609	Canola	cytosol	25.49	24.76
Bra016439.1-P	Field mustard	cytosol	25.49	24.76
EER95817	Sorghum	nucleus	23.53	24.74
CDY01339	Canola	nucleus	25.0	24.64
Bra012264.1-P	Field mustard	cytosol	25.0	24.64
AT1G76600.1	Thale cress	nucleus	25.98	24.54
CDY06423	Canola	cytosol	19.12	24.22
CDY00357	Canola	nucleus	24.51	24.15
CDY04592	Canola	plastid	26.96	22.82
CDY29485	Canola	plastid	26.47	22.31

Protein Annotations

EnsemblPlants:EES06442	EnsemblPlantsGene:SORBI_3004G076800	EntrezGene:8072363	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF25
PFAM:PF14009	ProteinID:EES06442	ProteinID:EES06442.1	RefSeq:XP_002453466.1	RefSeq:XP_002457530.1	SEG:seg
UniParc:UPI0001A84D3E	UniProt:C5XF19	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6333997..6334959

Molecular Weight (calculated)

21824.3 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.197

Length

204 amino acids

Sequence
(BLAST)

001: MGLKLSCIHH HSSLSRQAHL PASPAPARVI ATDGSLKELP ASSPSTVADV LGRSSDAAAS SFFVCNSDAL YFNERPPALP PGEVLQPGKI YFVLPAAMLK
101: RPLSTAEMAA LAVRATTALA SSTKPRRHER RGVRGGGKMM AVRVMPVREE MEDGGEDIFN EKLNQQTLGE FGMLLSPAKD EKFAAATATS RLKRALSIIQ
201: EDAE

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.