Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76600.1 | CDX83579 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDX99733 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY13606 | AT3G26030.1 | 21798944 |
| AT1G76600.1 | CDY40986 | AT3G26030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008267.1-P | Field mustard | nucleus | 99.53 | 99.53 |
| CDY20399 | Canola | nucleus, plastid | 96.7 | 96.24 |
| CDX68092 | Canola | cytosol, plastid | 83.02 | 83.81 |
| CDX85960 | Canola | cytosol | 81.6 | 83.17 |
| AT1G76600.1 | Thale cress | nucleus | 76.89 | 75.46 |
| CDY00357 | Canola | nucleus | 66.04 | 67.63 |
| CDY01339 | Canola | nucleus | 66.04 | 67.63 |
| CDY33663 | Canola | cytosol | 63.21 | 64.73 |
| CDX96609 | Canola | cytosol | 62.74 | 63.33 |
| CDY04592 | Canola | plastid | 71.23 | 62.66 |
| CDY06423 | Canola | cytosol | 47.17 | 62.11 |
| CDY29485 | Canola | plastid | 70.28 | 61.57 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 46.23 | 51.31 |
| Solyc04g082960.1.1 | Tomato | cytosol | 39.62 | 44.92 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 41.51 | 44.9 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.87 | 37.38 |
| CDY45243 | Canola | cytosol | 24.53 | 37.14 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 30.66 | 35.33 |
| CDX76853 | Canola | cytosol | 26.89 | 34.76 |
| CDY39665 | Canola | cytosol | 26.42 | 34.36 |
| CDX89594 | Canola | cytosol | 26.42 | 34.36 |
| CDX77946 | Canola | cytosol | 23.58 | 33.78 |
| CDY46066 | Canola | cytosol | 25.94 | 33.74 |
| CDX81387 | Canola | cytosol | 24.06 | 32.9 |
| CDY42708 | Canola | nucleus | 26.42 | 32.75 |
| CDY55087 | Canola | cytosol | 23.11 | 32.45 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 26.42 | 32.37 |
| CDY18612 | Canola | cytosol | 23.58 | 32.26 |
| CDX72612 | Canola | nucleus | 25.94 | 32.16 |
| CDX73789 | Canola | cytosol | 23.11 | 32.03 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 25.94 | 31.79 |
| CDY28982 | Canola | nucleus | 23.11 | 31.41 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 23.11 | 31.41 |
| TraesCS6D01G158100.1 | Wheat | plastid | 26.89 | 30.81 |
| HORVU6Hr1G034380.1 | Barley | plastid | 27.36 | 30.37 |
| TraesCS6A01G168600.1 | Wheat | plastid | 28.3 | 30.3 |
| CDX75606 | Canola | nucleus | 25.0 | 30.29 |
| Os02t0193300-01 | Rice | mitochondrion | 27.36 | 30.21 |
| CDY28078 | Canola | cytosol | 22.64 | 30.0 |
| TraesCS6B01G196500.1 | Wheat | plastid | 26.89 | 30.0 |
| TraesCS6D01G157600.1 | Wheat | plastid | 26.89 | 30.0 |
| TraesCS6D01G158000.1 | Wheat | plastid | 26.89 | 29.84 |
| TraesCS6D01G157700.1 | Wheat | plastid | 27.36 | 29.59 |
| TraesCS6B01G196600.1 | Wheat | plastid | 27.36 | 29.59 |
| CDX69254 | Canola | cytosol | 24.53 | 29.21 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 25.47 | 29.03 |
| Os02t0193200-01 | Rice | mitochondrion | 27.36 | 29.0 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 25.94 | 28.06 |
| TraesCS7D01G390000.1 | Wheat | plastid | 25.47 | 27.55 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 22.64 | 27.43 |
| TraesCS7A01G394600.1 | Wheat | plastid | 25.0 | 27.04 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 25.0 | 26.5 |
| EES06442 | Sorghum | plastid | 25.47 | 26.47 |
| TraesCS7B01G296600.1 | Wheat | plastid | 24.06 | 26.15 |
| TraesCS7B01G296700.1 | Wheat | plastid | 23.58 | 26.04 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 25.47 | 25.47 |
| Zm00001d036787_P001 | Maize | plastid | 25.47 | 24.88 |
| Zm00001d046687_P001 | Maize | plastid | 24.53 | 24.88 |
| HORVU7Hr1G093080.1 | Barley | plastid | 24.53 | 24.64 |
| OQU84553 | Sorghum | plastid | 23.58 | 24.63 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 24.06 | 24.4 |
| Zm00001d015867_P001 | Maize | plastid | 24.53 | 24.3 |
| EER88673 | Sorghum | plastid | 25.94 | 23.91 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 22.17 | 22.38 |
| TraesCS7D01G390100.1 | Wheat | plastid | 24.53 | 21.76 |
Protein Annotations
| EnsemblPlants:CDY45978 | EnsemblPlantsGene:GSBRNA2T00083082001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 | PFAM:PF14009 |
| ProteinID:CDY45978 | ProteinID:CDY45978.1 | SEG:seg | UniParc:UPI0004EE7B50 | UniProt:A0A078I9Y2 | MapMan:35.2 |
Description
BnaA02g18180DBnaA02g18180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9Y2]
Coordinates
chrLK032645:-:10301..10939
Molecular Weight (calculated)
23243.7 Da
IEP (calculated)
10.371
GRAVY (calculated)
-0.343
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSVGRS DCDSSPTAKI VTVNGDLREY NVPVLASQVL EAESSSSSSS SRTSSYFLCN SDSLYYDDFI PAIESEEFLQ ADQIYFVLPI SKRQYRLTAS
101: DMAALAVKAS VAIEKAAGKK NRRRKSGRIS PVMMLNQPNE RSVAVNRSAN ETMMAQKGKV LNKTTPFKTA NTSGYSRSGS VRRFKRYASV GAKKLAARSI
201: KRLSTIYEGT VF
101: DMAALAVKAS VAIEKAAGKK NRRRKSGRIS PVMMLNQPNE RSVAVNRSAN ETMMAQKGKV LNKTTPFKTA NTSGYSRSGS VRRFKRYASV GAKKLAARSI
201: KRLSTIYEGT VF
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.