Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24764 | Canola | cytosol, nucleus, plastid | 94.22 | 94.22 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 86.13 | 88.69 |
| CDY42708 | Canola | nucleus | 83.24 | 84.21 |
| CDX72612 | Canola | nucleus | 81.5 | 82.46 |
| CDX75606 | Canola | nucleus | 82.08 | 81.14 |
| CDX69254 | Canola | cytosol | 82.08 | 79.78 |
| CDX89594 | Canola | cytosol | 67.63 | 71.78 |
| CDY39665 | Canola | cytosol | 67.05 | 71.17 |
| CDY46066 | Canola | cytosol | 65.32 | 69.33 |
| CDX76853 | Canola | cytosol | 64.16 | 67.68 |
| CDY45243 | Canola | cytosol | 45.66 | 56.43 |
| Solyc03g044860.1.1 | Tomato | cytosol | 47.4 | 56.16 |
| Solyc02g089990.1.1 | Tomato | nucleus | 52.02 | 55.9 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 46.82 | 55.86 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 52.02 | 55.56 |
| CDX77946 | Canola | cytosol | 47.4 | 55.41 |
| KRH76906 | Soybean | cytosol | 50.87 | 55.35 |
| CDX73789 | Canola | cytosol | 48.55 | 54.9 |
| CDY18612 | Canola | cytosol | 48.55 | 54.19 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 48.55 | 53.85 |
| CDX81387 | Canola | cytosol | 47.98 | 53.55 |
| CDY55087 | Canola | cytosol | 46.24 | 52.98 |
| KRH28562 | Soybean | cytosol | 49.71 | 52.76 |
| CDY28982 | Canola | nucleus | 47.4 | 52.56 |
| PGSC0003DMT400007187 | Potato | cytosol | 44.51 | 50.66 |
| Solyc02g065430.1.1 | Tomato | cytosol | 44.51 | 50.66 |
| CDY28078 | Canola | cytosol | 46.82 | 50.62 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 50.29 | 50.0 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 46.24 | 48.48 |
| KRH69989 | Soybean | cytosol | 44.51 | 46.67 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 44.51 | 46.39 |
| KRH08345 | Soybean | cytosol | 42.77 | 43.27 |
| Os03t0740200-00 | Rice | plastid | 31.79 | 32.35 |
| TraesCS5A01G379900.1 | Wheat | plastid | 30.64 | 31.74 |
| TraesCS5B01G383500.1 | Wheat | plastid | 31.21 | 31.4 |
| TraesCS5D01G389400.1 | Wheat | plastid | 30.64 | 31.36 |
| Zm00001d034190_P001 | Maize | cytosol | 32.37 | 30.77 |
| Zm00001d013311_P001 | Maize | plastid | 28.32 | 30.62 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 30.64 | 30.11 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 30.64 | 30.11 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 30.06 | 29.55 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 30.06 | 29.55 |
| Os03t0768900-00 | Rice | cytosol | 30.06 | 29.55 |
| CDY01339 | Canola | nucleus | 35.26 | 29.47 |
| EER93387 | Sorghum | cytosol | 31.79 | 29.26 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 30.06 | 29.05 |
| CDX96609 | Canola | cytosol | 35.26 | 29.05 |
| CDY33663 | Canola | cytosol | 34.68 | 28.99 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 29.48 | 28.98 |
| Zm00001d033943_P001 | Maize | plastid | 27.75 | 28.92 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 27.75 | 28.74 |
| Zm00001d013178_P001 | Maize | cytosol | 30.64 | 28.49 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 30.64 | 28.49 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 28.9 | 28.41 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 28.9 | 28.41 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 28.9 | 27.93 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 30.64 | 27.89 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 30.06 | 27.81 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 29.48 | 27.72 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 30.06 | 27.66 |
| TraesCS2D01G257800.1 | Wheat | plastid | 30.64 | 27.6 |
| CDY00357 | Canola | nucleus | 32.95 | 27.54 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 27.17 | 27.49 |
| HORVU5Hr1G093900.1 | Barley | plastid | 27.75 | 27.43 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 29.48 | 27.42 |
| TraesCS2A01G266000.1 | Wheat | plastid | 30.06 | 27.08 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 28.9 | 27.03 |
| TraesCS1A01G436400.1 | Wheat | plastid | 29.48 | 26.98 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 27.75 | 26.82 |
| EER95817 | Sorghum | nucleus | 30.06 | 26.8 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 28.9 | 26.6 |
| Os07t0123100-00 | Rice | extracellular | 31.21 | 26.34 |
| CDY20399 | Canola | nucleus, plastid | 32.37 | 26.29 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 24.86 | 26.06 |
| CDY45978 | Canola | nucleus | 31.79 | 25.94 |
| HORVU2Hr1G061800.1 | Barley | plastid | 28.32 | 25.79 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 27.75 | 25.53 |
| CDX85960 | Canola | cytosol | 30.64 | 25.48 |
| CDX68092 | Canola | cytosol, plastid | 30.64 | 25.24 |
| CDY29485 | Canola | plastid | 35.26 | 25.21 |
| CDY04592 | Canola | plastid | 34.68 | 24.9 |
| Zm00001d007974_P001 | Maize | nucleus | 27.75 | 24.87 |
| Zm00001d018717_P001 | Maize | cytosol | 27.75 | 24.74 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 30.06 | 24.3 |
| TraesCS5A01G403900.1 | Wheat | plastid | 30.64 | 22.75 |
| CDY06423 | Canola | cytosol | 19.65 | 21.12 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 18.5 | 16.16 |
Protein Annotations
| EnsemblPlants:CDY22462 | EnsemblPlantsGene:GSBRNA2T00019010001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | PFAM:PF14009 |
| ProteinID:CDY22462 | ProteinID:CDY22462.1 | SEG:seg | UniParc:UPI0004EE7E3F | UniProt:A0A078GBL1 | MapMan:35.2 |
Description
BnaC03g61750DBnaC03g61750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBL1]
Coordinates
chrLK032131:+:605984..606564
Molecular Weight (calculated)
18592.3 Da
IEP (calculated)
7.723
GRAVY (calculated)
-0.242
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSEST QVATSKLILQ DGKMMEFANP VKVGYVLQKY PMCFICNSDD MDFDDAVSAI SADEELQLGQ IYFALPLRWL REPLKAEEMA ALAVKASSAL
101: MRSGGGGGGS CRRMCINPIV VSDKYRLQVG SGDDTVGSGR VRRKGRNVDG GGGSTSSGRR RKCYAAELST IEE
101: MRSGGGGGGS CRRMCINPIV VSDKYRLQVG SGDDTVGSGR VRRKGRNVDG GGGSTSSGRR RKCYAAELST IEE
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.