Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 87.3 | 88.71 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 87.3 | 86.84 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 83.6 | 84.49 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 73.55 | 84.24 |
| TraesCS2A01G266000.1 | Wheat | plastid | 80.95 | 79.69 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 53.97 | 57.95 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 51.85 | 55.68 |
| Os07t0123100-00 | Rice | extracellular | 60.32 | 55.61 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 51.32 | 54.19 |
| Zm00001d018717_P001 | Maize | cytosol | 55.03 | 53.61 |
| EER95817 | Sorghum | nucleus | 55.03 | 53.61 |
| Zm00001d007974_P001 | Maize | nucleus | 50.79 | 49.74 |
| TraesCS5A01G379900.1 | Wheat | plastid | 39.15 | 44.31 |
| TraesCS5A01G403900.1 | Wheat | plastid | 51.85 | 42.06 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 33.33 | 37.95 |
| CDY45243 | Canola | cytosol | 27.51 | 37.14 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 32.28 | 36.97 |
| Solyc02g089990.1.1 | Tomato | nucleus | 31.22 | 36.65 |
| CDX77946 | Canola | cytosol | 28.57 | 36.49 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 31.22 | 36.42 |
| Bra036862.1-P | Field mustard | cytosol | 28.04 | 35.81 |
| Bra012084.1-P | Field mustard | cytosol | 26.45 | 35.71 |
| CDX73789 | Canola | cytosol | 28.57 | 35.29 |
| CDX81387 | Canola | cytosol | 28.57 | 34.84 |
| CDY28982 | Canola | nucleus | 28.57 | 34.62 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 26.45 | 34.48 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 29.63 | 34.36 |
| CDY18612 | Canola | cytosol | 28.04 | 34.19 |
| Bra037163.1-P | Field mustard | cytosol | 28.04 | 34.19 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 28.04 | 33.97 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 28.04 | 33.97 |
| AT5G66580.1 | Thale cress | cytosol | 28.04 | 33.97 |
| KRH76906 | Soybean | cytosol | 28.57 | 33.96 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.1 | 33.74 |
| KRH28562 | Soybean | cytosol | 29.1 | 33.74 |
| Solyc03g044860.1.1 | Tomato | cytosol | 25.93 | 33.56 |
| Bra031814.1-P | Field mustard | cytosol | 26.45 | 33.11 |
| CDY55087 | Canola | cytosol | 26.45 | 33.11 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 26.45 | 32.89 |
| PGSC0003DMT400007187 | Potato | cytosol | 25.93 | 32.24 |
| Solyc02g065430.1.1 | Tomato | cytosol | 25.93 | 32.24 |
| CDX72612 | Canola | nucleus | 29.1 | 32.16 |
| Bra017789.1-P | Field mustard | nucleus | 29.1 | 32.16 |
| CDY28078 | Canola | cytosol | 26.98 | 31.88 |
| CDY42708 | Canola | nucleus | 28.57 | 31.58 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 28.04 | 31.55 |
| CDY39665 | Canola | cytosol | 26.98 | 31.29 |
| Bra032151.1-P | Field mustard | cytosol | 26.98 | 31.29 |
| CDX76853 | Canola | cytosol | 26.98 | 31.1 |
| AT2G23690.1 | Thale cress | cytosol | 26.45 | 30.67 |
| CDY46066 | Canola | cytosol | 26.45 | 30.67 |
| Bra039208.1-P | Field mustard | cytosol | 22.22 | 30.22 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 26.98 | 29.48 |
| CDX89594 | Canola | cytosol | 25.4 | 29.45 |
| KRH08345 | Soybean | cytosol | 26.45 | 29.24 |
| KRH69989 | Soybean | cytosol | 25.4 | 29.09 |
| TraesCS7A01G394600.1 | Wheat | plastid | 30.16 | 29.08 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 28.57 | 29.03 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 26.45 | 28.9 |
| TraesCS6A01G168600.1 | Wheat | plastid | 29.63 | 28.28 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 25.93 | 28.16 |
| CDX69254 | Canola | cytosol | 26.45 | 28.09 |
| Bra011715.1-P | Field mustard | nucleus | 25.93 | 28.0 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 22.22 | 28.0 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 29.63 | 28.0 |
| CDX75606 | Canola | nucleus | 25.93 | 28.0 |
| TraesCS5A01G269900.1 | Wheat | plastid | 28.57 | 27.98 |
| TraesCS5A01G270100.1 | Wheat | plastid | 30.16 | 25.79 |
| TraesCS5A01G270000.1 | Wheat | plastid | 28.57 | 24.88 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G436400.1 | EnsemblPlantsGene:TraesCS1A01G436400 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:586605499..586606068
Molecular Weight (calculated)
19569.5 Da
IEP (calculated)
8.483
GRAVY (calculated)
-0.016
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGSA AAAVPAKGQP ASTAMVLLPT GELQEYPRPA TAGQALDDSV AGDAGWFLCD ADEMPFEGPV AAVGVAEELR PGQIYFLLPA EARRNGLRRE
101: DLAALAVRAS AALVKKANTA ASSAGVGRRR RAGSVAPLVF APPQEVVETV AYKTVPALAA KRRPVARANS SGRMQPRFAP DLTAIPECE
101: DLAALAVRAS AALVKKANTA ASSAGVGRRR RAGSVAPLVF APPQEVVETV AYKTVPALAA KRRPVARANS SGRMQPRFAP DLTAIPECE
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.