Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- peroxisome 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27420_001 | Banana | cytosol | 65.66 | 66.06 |
| KRH76906 | Soybean | cytosol | 50.6 | 52.83 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 51.2 | 52.15 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 51.2 | 52.15 |
| Solyc02g089990.1.1 | Tomato | nucleus | 49.4 | 50.93 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 48.8 | 50.0 |
| CDX89594 | Canola | cytosol | 48.8 | 49.69 |
| CDY39665 | Canola | cytosol | 48.19 | 49.08 |
| Bra032151.1-P | Field mustard | cytosol | 48.19 | 49.08 |
| AT2G23690.1 | Thale cress | cytosol | 47.59 | 48.47 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 42.17 | 48.28 |
| KRH28562 | Soybean | cytosol | 46.99 | 47.85 |
| CDY46066 | Canola | cytosol | 46.99 | 47.85 |
| Bra017789.1-P | Field mustard | nucleus | 48.8 | 47.37 |
| Solyc03g044860.1.1 | Tomato | cytosol | 41.57 | 47.26 |
| CDY45243 | Canola | cytosol | 39.76 | 47.14 |
| CDX76853 | Canola | cytosol | 46.39 | 46.95 |
| CDX72612 | Canola | nucleus | 48.19 | 46.78 |
| PGSC0003DMT400007187 | Potato | cytosol | 42.77 | 46.71 |
| Solyc02g065430.1.1 | Tomato | cytosol | 42.77 | 46.71 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 48.8 | 46.55 |
| Bra012084.1-P | Field mustard | cytosol | 39.16 | 46.43 |
| CDY42708 | Canola | nucleus | 47.59 | 46.2 |
| CDX77946 | Canola | cytosol | 40.96 | 45.95 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 46.39 | 45.83 |
| Bra031814.1-P | Field mustard | cytosol | 41.57 | 45.7 |
| CDY55087 | Canola | cytosol | 41.57 | 45.7 |
| AT5G66580.1 | Thale cress | cytosol | 42.77 | 45.51 |
| Bra039208.1-P | Field mustard | cytosol | 37.95 | 45.32 |
| Bra036862.1-P | Field mustard | cytosol | 39.76 | 44.59 |
| CDY18612 | Canola | cytosol | 41.57 | 44.52 |
| Bra037163.1-P | Field mustard | cytosol | 41.57 | 44.52 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 46.39 | 44.51 |
| CDX73789 | Canola | cytosol | 40.96 | 44.44 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 40.36 | 44.08 |
| CDX81387 | Canola | cytosol | 40.96 | 43.87 |
| CDY28982 | Canola | nucleus | 40.96 | 43.59 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 40.96 | 43.59 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 40.96 | 43.59 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 45.18 | 43.35 |
| KRH69989 | Soybean | cytosol | 41.57 | 41.82 |
| CDX75606 | Canola | nucleus | 43.98 | 41.71 |
| Bra011715.1-P | Field mustard | nucleus | 43.98 | 41.71 |
| CDX69254 | Canola | cytosol | 44.58 | 41.57 |
| TraesCS5A01G379900.1 | Wheat | plastid | 40.96 | 40.72 |
| TraesCS5B01G383500.1 | Wheat | plastid | 42.17 | 40.7 |
| TraesCS5D01G389400.1 | Wheat | plastid | 40.96 | 40.24 |
| CDY28078 | Canola | cytosol | 38.55 | 40.0 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 36.14 | 40.0 |
| KRH08345 | Soybean | cytosol | 40.96 | 39.77 |
| Os03t0740200-00 | Rice | plastid | 39.76 | 38.82 |
| Os03t0768900-00 | Rice | cytosol | 40.96 | 38.64 |
| Zm00001d033943_P001 | Maize | plastid | 38.55 | 38.55 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 38.55 | 38.32 |
| Zm00001d013311_P001 | Maize | plastid | 36.75 | 38.12 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 40.36 | 38.07 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 40.36 | 38.07 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 40.36 | 38.07 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 40.96 | 37.99 |
| Zm00001d034190_P001 | Maize | cytosol | 41.57 | 37.91 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 39.76 | 37.5 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 39.16 | 36.93 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 39.16 | 36.93 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 39.76 | 36.87 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 37.95 | 36.84 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 38.55 | 36.36 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 39.16 | 36.31 |
| HORVU5Hr1G093900.1 | Barley | plastid | 37.95 | 36.0 |
| EER93387 | Sorghum | cytosol | 40.36 | 35.64 |
| Zm00001d013178_P001 | Maize | cytosol | 39.76 | 35.48 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 39.16 | 35.33 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 37.95 | 33.87 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 37.95 | 33.69 |
| TraesCS1A01G436400.1 | Wheat | plastid | 37.95 | 33.33 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 37.35 | 32.63 |
| TraesCS2D01G257800.1 | Wheat | plastid | 37.35 | 32.29 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 36.14 | 32.26 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 35.54 | 32.07 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 35.54 | 31.89 |
| TraesCS2A01G266000.1 | Wheat | plastid | 36.75 | 31.77 |
| Os07t0123100-00 | Rice | extracellular | 39.16 | 31.71 |
| HORVU2Hr1G061800.1 | Barley | plastid | 36.14 | 31.58 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 35.54 | 31.38 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 35.54 | 31.38 |
| Zm00001d018717_P001 | Maize | cytosol | 36.14 | 30.93 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 30.72 | 30.91 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 34.94 | 30.85 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 39.16 | 30.37 |
| EER95817 | Sorghum | nucleus | 34.94 | 29.9 |
| TraesCS5A01G403900.1 | Wheat | plastid | 40.96 | 29.18 |
| Zm00001d007974_P001 | Maize | nucleus | 28.92 | 24.87 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 22.89 | 19.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P08730_001 | EnsemblPlants:GSMUA_Achr2T08730_001 | EnsemblPlantsGene:GSMUA_Achr2G08730_001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI000295D949 | UniProt:M0S6B4 | MapMan:35.2 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G08730_001]
Coordinates
chr2:-:12634182..12634682
Molecular Weight (calculated)
17305.0 Da
IEP (calculated)
8.387
GRAVY (calculated)
-0.018
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICKSCDAT GVAEPATAKL VLQDGKLQEF ERPVKVSHLL QKDPTCFVCD SDGMVFDGLV MAVDADDELQ PGQLYFLLPV SMLRRPLHAE EMAALAVKAS
101: AALGAARGAC SRHSRSVAPL TFHPAMPAAA GGGASGMMGG GKSRVNCKRR GGKGRDFASK LSAISE
101: AALGAARGAC SRHSRSVAPL TFHPAMPAAA GGGASGMMGG GKSRVNCKRR GGKGRDFASK LSAISE
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.