CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH52586
KRH61926
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	KRH52586	AT1G22920.1	21798944
AT4G37240.1	KRH61926	AT1G22920.1	21798944
AT4G37240.1	KRG89812	AT2G41090.1	17360592
AT4G37240.1	KRG94975	AT2G41090.1	17360592
AT4G37240.1	KRH18664	AT2G41090.1	17360592
AT4G37240.1	KRG89812	AT2G41100.1	17360592
AT4G37240.1	KRG94975	AT2G41100.1	17360592
AT4G37240.1	KRH18664	AT2G41100.1	17360592
AT4G37240.1	KRH31638	AT4G14640.1	17360592
AT4G37240.1	KRH69070	AT4G14640.1	17360592
AT4G37240.1	KRG89812	AT5G21274.1	17360592
AT4G37240.1	KRG94975	AT5G21274.1	17360592
AT4G37240.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76906	Soybean	cytosol	86.5	88.68
VIT_00s0207g00180.t01	Wine grape	cytosol	61.96	61.96
VIT_00s0207g00140.t01	Wine grape	cytosol	61.35	61.35
Solyc02g089990.1.1	Tomato	nucleus	57.67	58.39
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	57.67	58.02
CDY39665	Canola	cytosol	53.99	53.99
Bra032151.1-P	Field mustard	cytosol	53.99	53.99
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	47.85	53.79
AT2G23690.1	Thale cress	cytosol	53.37	53.37
KRH69989	Soybean	cytosol	53.99	53.33
Solyc03g044860.1.1	Tomato	cytosol	47.24	52.74
CDX89594	Canola	cytosol	52.15	52.15
PGSC0003DMT400007187	Potato	cytosol	48.47	51.97
CDY46066	Canola	cytosol	50.92	50.92
Solyc02g065430.1.1	Tomato	cytosol	47.24	50.66
CDX76853	Canola	cytosol	50.92	50.61
Bra017789.1-P	Field mustard	nucleus	52.76	50.29
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	51.53	50.0
CDY22462	Canola	cytosol, nucleus, plastid	52.76	49.71
CDY42708	Canola	nucleus	52.15	49.71
CDX72612	Canola	nucleus	51.53	49.12
CDY24764	Canola	cytosol, nucleus, plastid	51.53	48.55
KRH08345	Soybean	cytosol	50.92	48.54
GSMUA_Achr7P27420_001	Banana	cytosol	47.85	47.27
GSMUA_Achr2P08730_001	Banana	cytosol	47.85	46.99
Bra039208.1-P	Field mustard	cytosol	39.88	46.76
Bra011715.1-P	Field mustard	nucleus	49.69	46.29
CDX75606	Canola	nucleus	49.69	46.29
CDX69254	Canola	cytosol	50.31	46.07
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	41.1	44.67
HORVU5Hr1G098280.1	Barley	cytosol	34.36	31.82
TraesCS5A01G404100.1	Wheat	cytosol	34.36	31.82
TraesCS5A01G404200.1	Wheat	cytosol	34.36	31.82
Os03t0768900-00	Rice	cytosol	34.36	31.82
TraesCS5A01G379900.1	Wheat	plastid	32.52	31.74
TraesCS5D01G389400.1	Wheat	plastid	32.52	31.36
TraesCS5D01G414000.1	Wheat	cytosol	34.36	31.28
TraesCS5A01G404000.1	Wheat	cytosol	34.36	31.28
TraesCS5B01G408800.1	Wheat	cytosol	33.74	31.25
Zm00001d013311_P001	Maize	plastid	30.67	31.25
TraesCS5D01G414200.1	Wheat	cytosol	33.74	31.25
HORVU5Hr1G098290.1	Barley	cytosol	33.74	31.25
TraesCS5D01G414300.1	Wheat	cytosol	33.74	31.25
TraesCS5D01G414100.1	Wheat	cytosol	33.74	30.73
Zm00001d033943_P001	Maize	plastid	31.29	30.72
Os03t0740200-00	Rice	plastid	31.9	30.59
TraesCS5B01G408700.1	Wheat	cytosol	34.36	30.43
TraesCS5B01G409000.1	Wheat	cytosol	31.9	30.41
TraesCS5B01G383500.1	Wheat	plastid	31.9	30.23
KXG37596	Sorghum	cytosol, nucleus, plastid	30.06	29.34
Zm00001d034190_P001	Maize	cytosol	32.52	29.12
TraesCS1A01G436400.1	Wheat	plastid	33.74	29.1
TraesCS1A01G436300.1	Wheat	mitochondrion	33.74	28.95
HORVU1Hr1G094330.1	Barley	cytosol	33.13	28.88
EER93387	Sorghum	cytosol	33.13	28.72
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	32.52	28.49
Zm00001d013178_P001	Maize	cytosol	32.52	28.49
HORVU5Hr1G093900.1	Barley	plastid	30.06	28.0
TraesCS1D01G444800.1	Wheat	cytosol, plastid	31.9	27.96
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	31.9	27.66
TraesCS2D01G257800.1	Wheat	plastid	32.52	27.6
TraesCS1B01G471500.1	Wheat	mitochondrion	31.29	27.57
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	31.29	27.13
TraesCS2A01G266000.1	Wheat	plastid	31.9	27.08
HORVU2Hr1G061800.1	Barley	plastid	31.29	26.84
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	34.97	26.64
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	30.67	26.6
EER95817	Sorghum	nucleus	31.29	26.29
TraesCS2A01G266100.1	Wheat	cytosol	26.38	26.06
KRH24527	Soybean	cytosol	22.09	25.17
KRH29531	Soybean	cytosol	22.09	25.0
Os07t0123100-00	Rice	extracellular	30.67	24.39
Zm00001d018717_P001	Maize	cytosol	28.83	24.23
TraesCS5A01G403900.1	Wheat	plastid	33.13	23.18
KRH76905	Soybean	plastid	20.25	22.6
KRH28563	Soybean	plastid	20.25	22.45
Zm00001d007974_P001	Maize	nucleus	23.93	20.21
HORVU2Hr1G061850.1	Barley	extracellular, plastid	23.93	19.7

Protein Annotations

EMBL:ACUP02006757	EnsemblPlants:KRH28562	EnsemblPlantsGene:GLYMA_11G061800	EntrezGene:100776171	InterPro:DUF4228_plant	PANTHER:PTHR33052
PANTHER:PTHR33052:SF17	PFAM:PF14009	ProteinID:KRH28562	ProteinID:KRH28562.1	UniParc:UPI000233D14A	UniProt:I1LHK4
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:4632831..4633552

Molecular Weight (calculated)

17758.2 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.222

Length

163 amino acids

Sequence
(BLAST)

001: MGNCSSSDST QLATAKLLLQ DGRLQEFSYP VKVSFLLHNY PACFICNSDE MEFHDVVSPI HEDQVLQPGQ LYFALPLSLL RHSLQPHEMA ALAVKASSAL
101: MKTAHKCGSR RKQILFSNEY DSNPKRVSPT LAADAGTVHR RGRATGASGG KGRFAALLSS IPE

Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)

001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.