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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400023896
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400069203
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G37240.1 PGSC0003DMT400023896 AT1G22920.1 21798944
AT4G37240.1 PGSC0003DMT400069203 AT1G22920.1 21798944
AT4G37240.1 PGSC0003DMT400014123 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400014123 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400034833 AT4G14640.1 17360592
AT4G37240.1 PGSC0003DMT400042062 AT4G14640.1 17360592
AT4G37240.1 PGSC0003DMT400014123 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g044860.1.1 Tomato cytosol 88.97 88.36
PGSC0003DMT400026013 Potato cytosol, nucleus, plastid 66.9 59.88
PGSC0003DMT400007187 Potato cytosol 62.76 59.87
VIT_00s0207g00140.t01 Wine grape cytosol 60.0 53.37
VIT_00s0207g00180.t01 Wine grape cytosol 60.0 53.37
KRH76906 Soybean cytosol 56.55 51.57
CDX89594 Canola cytosol 55.17 49.08
Bra032151.1-P Field mustard cytosol 54.48 48.47
AT2G23690.1 Thale cress cytosol 54.48 48.47
CDY39665 Canola cytosol 54.48 48.47
KRH28562 Soybean cytosol 53.79 47.85
CDY46066 Canola cytosol 53.79 47.85
CDX76853 Canola cytosol 53.79 47.56
CDY24764 Canola cytosol, nucleus, plastid 56.55 47.4
CDX69254 Canola cytosol 57.93 47.19
AT4G37240.1 Thale cress cytosol, nucleus, plastid 54.48 47.02
Bra011715.1-P Field mustard nucleus 56.55 46.86
CDX75606 Canola nucleus 56.55 46.86
CDY22462 Canola cytosol, nucleus, plastid 55.86 46.82
Bra017789.1-P Field mustard nucleus 54.48 46.2
CDY42708 Canola nucleus 53.79 45.61
CDX72612 Canola nucleus 53.1 45.03
Bra010578.1-P Field mustard cytosol, nucleus, plastid 45.52 44.0
Bra039208.1-P Field mustard cytosol 41.38 43.17
GSMUA_Achr2P08730_001 Banana cytosol 48.28 42.17
GSMUA_Achr7P27420_001 Banana cytosol 46.9 41.21
KRH69989 Soybean cytosol 45.52 40.0
KRH08345 Soybean cytosol 46.21 39.18
TraesCS5A01G379900.1 Wheat plastid 37.93 32.93
TraesCS5B01G383500.1 Wheat plastid 38.62 32.56
TraesCS5D01G389400.1 Wheat plastid 37.93 32.54
Zm00001d013311_P001 Maize plastid 35.86 32.5
Os03t0740200-00 Rice plastid 37.93 32.35
KXG37596 Sorghum cytosol, nucleus, plastid 35.86 31.14
Zm00001d033943_P001 Maize plastid 35.17 30.72
TraesCS5A01G404200.1 Wheat cytosol 36.55 30.11
Zm00001d034190_P001 Maize cytosol 37.24 29.67
TraesCS5D01G414000.1 Wheat cytosol 36.55 29.61
TraesCS5D01G414200.1 Wheat cytosol 35.17 28.98
HORVU5Hr1G098280.1 Barley cytosol 35.17 28.98
TraesCS5A01G404100.1 Wheat cytosol 35.17 28.98
HORVU5Hr1G093900.1 Barley plastid 34.48 28.57
Zm00001d013178_P001 Maize cytosol 36.55 28.49
Os03t0768900-00 Rice cytosol 34.48 28.41
TraesCS5B01G408800.1 Wheat cytosol 34.48 28.41
PGSC0003DMT400064780 Potato extracellular 30.34 28.39
TraesCS5D01G414100.1 Wheat cytosol 34.48 27.93
TraesCS5D01G414300.1 Wheat cytosol 33.79 27.84
HORVU5Hr1G098290.1 Barley cytosol 33.79 27.84
EER93387 Sorghum cytosol 35.86 27.66
TraesCS1D01G444800.1 Wheat cytosol, plastid 35.17 27.42
TraesCS5A01G404000.1 Wheat cytosol 33.79 27.37
TraesCS5B01G408700.1 Wheat cytosol 34.48 27.17
TraesCS2B01G276100.1 Wheat cytosol, extracellular, plastid 35.17 27.13
TraesCS1B01G471500.1 Wheat mitochondrion 34.48 27.03
TraesCS5B01G409000.1 Wheat cytosol 31.72 26.9
HORVU1Hr1G094330.1 Barley cytosol 34.48 26.74
TraesCS1A01G436400.1 Wheat plastid 34.48 26.45
TraesCS1A01G436300.1 Wheat mitochondrion 34.48 26.32
TraesCS2A01G266100.1 Wheat cytosol 29.66 26.06
TraesCS2A01G266000.1 Wheat plastid 34.48 26.04
PGSC0003DMT400025724 Potato cytosol, plastid 35.17 26.02
TraesCS2D01G257700.1 Wheat mitochondrion, nucleus, plastid 33.1 25.53
TraesCS2D01G257800.1 Wheat plastid 33.79 25.52
TraesCS1D01G444700.1 Wheat cytosol, extracellular, peroxisome, plastid 32.41 25.27
TraesCS2B01G276000.1 Wheat cytosol, nucleus, plastid 32.41 25.0
HORVU2Hr1G061800.1 Barley plastid 32.41 24.74
Os07t0123100-00 Rice extracellular 33.79 23.9
HORVU5Hr1G098260.1 Barley cytosol, mitochondrion 33.79 22.9
TraesCS5A01G403900.1 Wheat plastid 36.55 22.75
Zm00001d018717_P001 Maize cytosol 30.34 22.68
EER95817 Sorghum nucleus 30.34 22.68
Zm00001d007974_P001 Maize nucleus 27.59 20.73
HORVU2Hr1G061850.1 Barley extracellular, plastid 24.14 17.68
Protein Annotations
EnsemblPlants:PGSC0003DMT400059007EnsemblPlantsGene:PGSC0003DMG400022916EntrezGene:107058570InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF17
PFAM:PF14009PGSC:PGSC0003DMG400022916RefSeq:XP_015159889.1SEG:segUniParc:UPI0002948C0CUniProt:M1C3M8
MapMan:35.2:::::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022916]
Coordinates
chr3:+:9596118..9597042
Molecular Weight (calculated)
16140.6 Da
IEP (calculated)
9.930
GRAVY (calculated)
-0.270
Length
145 amino acids
Sequence
(BLAST)
001: MGICNSCEST SVATVKIILQ DGRLQEFSYP IKASYLLQKD PTIFICNSDE MEFGYKISAI NAEEELQLGQ LYFAMPLKRL RSRLRAEEMA ALAVKASSAL
101: KRTNSNKAFV FPQGKNCDRV TRNVVDGGVS GRRKKKTAKL SVIPE
Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.