Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032151.1-P | Field mustard | cytosol | 93.25 | 93.25 |
| CDY39665 | Canola | cytosol | 93.25 | 93.25 |
| CDX89594 | Canola | cytosol | 90.18 | 90.18 |
| CDY46066 | Canola | cytosol | 87.73 | 87.73 |
| Bra039208.1-P | Field mustard | cytosol | 73.62 | 86.33 |
| CDX76853 | Canola | cytosol | 85.89 | 85.37 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 69.94 | 67.86 |
| Solyc02g089990.1.1 | Tomato | nucleus | 57.67 | 58.39 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 57.06 | 57.41 |
| PGSC0003DMT400007187 | Potato | cytosol | 53.37 | 57.24 |
| KRH76906 | Soybean | cytosol | 55.21 | 56.6 |
| Solyc02g065430.1.1 | Tomato | cytosol | 52.15 | 55.92 |
| Solyc03g044860.1.1 | Tomato | cytosol | 49.69 | 55.48 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 50.92 | 54.61 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 48.47 | 54.48 |
| KRH28562 | Soybean | cytosol | 53.37 | 53.37 |
| AT5G66580.1 | Thale cress | cytosol | 49.69 | 51.92 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 52.76 | 49.43 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 48.47 | 47.59 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 47.24 | 46.67 |
| KRH69989 | Soybean | cytosol | 47.24 | 46.67 |
| KRH08345 | Soybean | cytosol | 47.24 | 45.03 |
| Os03t0740200-00 | Rice | plastid | 31.29 | 30.0 |
| TraesCS5A01G379900.1 | Wheat | plastid | 30.67 | 29.94 |
| TraesCS5D01G389400.1 | Wheat | plastid | 30.67 | 29.59 |
| Zm00001d034190_P001 | Maize | cytosol | 32.52 | 29.12 |
| TraesCS5B01G383500.1 | Wheat | plastid | 30.67 | 29.07 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 31.29 | 28.98 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 31.29 | 28.98 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 31.29 | 28.49 |
| Os03t0768900-00 | Rice | cytosol | 30.67 | 28.41 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 30.67 | 28.41 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 30.67 | 28.41 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 30.06 | 27.84 |
| AT1G21010.1 | Thale cress | cytosol | 35.58 | 27.62 |
| Zm00001d013311_P001 | Maize | plastid | 26.99 | 27.5 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 31.9 | 27.37 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 29.45 | 27.27 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 29.45 | 27.27 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 31.29 | 27.27 |
| EER93387 | Sorghum | cytosol | 31.29 | 27.13 |
| Zm00001d033943_P001 | Maize | plastid | 27.61 | 27.11 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 30.67 | 27.03 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 27.61 | 26.95 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 28.22 | 26.9 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 30.67 | 26.88 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 29.45 | 26.82 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 29.45 | 26.82 |
| EER95817 | Sorghum | nucleus | 31.9 | 26.8 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 30.67 | 26.6 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 30.67 | 26.6 |
| TraesCS2D01G257800.1 | Wheat | plastid | 31.29 | 26.56 |
| TraesCS1A01G436400.1 | Wheat | plastid | 30.67 | 26.45 |
| AT1G76600.1 | Thale cress | nucleus | 34.97 | 26.39 |
| Zm00001d013178_P001 | Maize | cytosol | 30.06 | 26.34 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 30.06 | 26.34 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 29.45 | 26.09 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 30.06 | 26.06 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 26.38 | 26.06 |
| TraesCS2A01G266000.1 | Wheat | plastid | 30.67 | 26.04 |
| Os07t0123100-00 | Rice | extracellular | 32.52 | 25.85 |
| HORVU5Hr1G093900.1 | Barley | plastid | 27.61 | 25.71 |
| Zm00001d018717_P001 | Maize | cytosol | 29.45 | 24.74 |
| HORVU2Hr1G061800.1 | Barley | plastid | 28.83 | 24.74 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 31.29 | 23.83 |
| Zm00001d007974_P001 | Maize | nucleus | 26.99 | 22.8 |
| TraesCS5A01G403900.1 | Wheat | plastid | 31.9 | 22.32 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 21.47 | 17.68 |
Protein Annotations
| MapMan:35.2 | EntrezGene:816900 | UniProt:A0A178VMZ9 | ProteinID:AEC07481.1 | EMBL:AK175905 | EMBL:AK229112 |
| ArrayExpress:AT2G23690 | EnsemblPlantsGene:AT2G23690 | RefSeq:AT2G23690 | TAIR:AT2G23690 | RefSeq:AT2G23690-TAIR-G | EnsemblPlants:AT2G23690.1 |
| TAIR:AT2G23690.1 | InterPro:DUF4228_plant | GO:GO:0005575 | RefSeq:NP_179949.2 | ProteinID:OAP07184.1 | PFAM:PF14009 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | UniProt:Q680G2 |
| UniParc:UPI000042BB72 | SEG:seg | : | : | : | : |
Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
Coordinates
chr2:+:10072057..10073126
Molecular Weight (calculated)
17649.3 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.223
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.