CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH52586
KRH61926
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	KRH52586	AT1G22920.1	21798944
AT4G37240.1	KRH61926	AT1G22920.1	21798944
AT4G37240.1	KRG89812	AT2G41090.1	17360592
AT4G37240.1	KRG94975	AT2G41090.1	17360592
AT4G37240.1	KRH18664	AT2G41090.1	17360592
AT4G37240.1	KRG89812	AT2G41100.1	17360592
AT4G37240.1	KRG94975	AT2G41100.1	17360592
AT4G37240.1	KRH18664	AT2G41100.1	17360592
AT4G37240.1	KRH31638	AT4G14640.1	17360592
AT4G37240.1	KRH69070	AT4G14640.1	17360592
AT4G37240.1	KRG89812	AT5G21274.1	17360592
AT4G37240.1	KRG94975	AT5G21274.1	17360592
AT4G37240.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08345	Soybean	cytosol	84.24	81.29
KRH76906	Soybean	cytosol	55.15	57.23
KRH28562	Soybean	cytosol	53.33	53.99
VIT_00s0207g00180.t01	Wine grape	cytosol	52.73	53.37
VIT_00s0207g00140.t01	Wine grape	cytosol	52.12	52.76
Solyc02g089990.1.1	Tomato	nucleus	49.09	50.31
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	48.48	49.38
Solyc03g044860.1.1	Tomato	cytosol	42.42	47.95
Bra032151.1-P	Field mustard	cytosol	47.27	47.85
CDY39665	Canola	cytosol	47.27	47.85
AT2G23690.1	Thale cress	cytosol	46.67	47.24
CDX89594	Canola	cytosol	46.67	47.24
Bra039208.1-P	Field mustard	cytosol	39.39	46.76
PGSC0003DMT400007187	Potato	cytosol	43.03	46.71
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	41.82	46.0
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	40.0	45.52
CDY46066	Canola	cytosol	44.85	45.4
Solyc02g065430.1.1	Tomato	cytosol	41.21	44.74
CDY22462	Canola	cytosol, nucleus, plastid	46.67	44.51
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	44.85	44.05
CDY24764	Canola	cytosol, nucleus, plastid	46.06	43.93
CDX76853	Canola	cytosol	43.64	43.9
Bra017789.1-P	Field mustard	nucleus	44.85	43.27
CDY42708	Canola	nucleus	44.24	42.69
GSMUA_Achr2P08730_001	Banana	cytosol	41.82	41.57
CDX72612	Canola	nucleus	43.03	41.52
Bra011715.1-P	Field mustard	nucleus	41.21	38.86
CDX75606	Canola	nucleus	41.21	38.86
GSMUA_Achr7P27420_001	Banana	cytosol	38.79	38.79
CDX69254	Canola	cytosol	41.82	38.76
TraesCS5A01G379900.1	Wheat	plastid	30.3	29.94
TraesCS5D01G389400.1	Wheat	plastid	30.3	29.59
Zm00001d013311_P001	Maize	plastid	28.48	29.38
Os03t0768900-00	Rice	cytosol	30.91	28.98
TraesCS5B01G383500.1	Wheat	plastid	29.7	28.49
HORVU5Hr1G098280.1	Barley	cytosol	29.7	27.84
TraesCS5D01G414200.1	Wheat	cytosol	29.7	27.84
Os03t0740200-00	Rice	plastid	28.48	27.65
TraesCS1D01G444800.1	Wheat	cytosol, plastid	30.91	27.42
TraesCS5A01G404000.1	Wheat	cytosol	29.7	27.37
TraesCS5D01G414000.1	Wheat	cytosol	29.7	27.37
TraesCS5D01G414100.1	Wheat	cytosol	29.7	27.37
TraesCS1A01G436300.1	Wheat	mitochondrion	31.52	27.37
TraesCS5A01G404200.1	Wheat	cytosol	29.09	27.27
HORVU5Hr1G098290.1	Barley	cytosol	29.09	27.27
TraesCS5B01G408700.1	Wheat	cytosol	30.3	27.17
Zm00001d034190_P001	Maize	cytosol	29.7	26.92
TraesCS5B01G409000.1	Wheat	cytosol	27.88	26.9
TraesCS5D01G414300.1	Wheat	cytosol	28.48	26.7
TraesCS5A01G404100.1	Wheat	cytosol	28.48	26.7
TraesCS2A01G266100.1	Wheat	cytosol	26.67	26.67
EER93387	Sorghum	cytosol	30.3	26.6
KXG37596	Sorghum	cytosol, nucleus, plastid	26.67	26.35
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	29.7	26.34
Zm00001d013178_P001	Maize	cytosol	29.7	26.34
HORVU5Hr1G093900.1	Barley	plastid	27.88	26.29
TraesCS5B01G408800.1	Wheat	cytosol	27.88	26.14
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	29.7	26.06
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	29.7	26.06
TraesCS2D01G257800.1	Wheat	plastid	30.3	26.04
TraesCS1B01G471500.1	Wheat	mitochondrion	29.09	25.95
Zm00001d033943_P001	Maize	plastid	26.06	25.9
HORVU1Hr1G094330.1	Barley	cytosol	29.09	25.67
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	29.09	25.53
TraesCS2A01G266000.1	Wheat	plastid	29.7	25.52
TraesCS1A01G436400.1	Wheat	plastid	29.09	25.4
HORVU2Hr1G061800.1	Barley	plastid	29.09	25.26
Os07t0123100-00	Rice	extracellular	30.91	24.88
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	32.12	24.77
KRH24527	Soybean	cytosol	21.21	24.48
KRH29531	Soybean	cytosol	21.21	24.31
Zm00001d018717_P001	Maize	cytosol	28.48	24.23
EER95817	Sorghum	nucleus	27.88	23.71
KRH76905	Soybean	plastid	19.39	21.92
TraesCS5A01G403900.1	Wheat	plastid	30.91	21.89
KRH28563	Soybean	plastid	19.39	21.77
Zm00001d007974_P001	Maize	nucleus	25.45	21.76
HORVU2Hr1G061850.1	Barley	extracellular, plastid	18.79	15.66

Protein Annotations

EMBL:ACUP02000744	EnsemblPlants:KRH69989	EnsemblPlantsGene:GLYMA_02G060900	EntrezGene:100809248	InterPro:DUF4228_plant	PANTHER:PTHR33052
PANTHER:PTHR33052:SF17	PFAM:PF14009	ProteinID:KRH69989	ProteinID:KRH69989.1	SEG:seg	UniParc:UPI0002336CCC
UniProt:I1JCU4	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:5530724..5531639

Molecular Weight (calculated)

17959.7 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.182

Length

165 amino acids

Sequence
(BLAST)

001: MGNCLLSSYE TTTTTVKVVV HDGRMEEFSY PVKVSYLLQL YPACFICDSD EMGFDDVVTA VHEDEELRPG QLYFALPLSR LKRHLPPQEM AALAVVATSA
101: LAKCGSRRKQ IVFLSSCDVN TKPGRKVAPE GTVGNNDVAR KGRSKIGGRG MGKFTATLSS IPEQG

Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)

001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.