CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG27287
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	KXG27287	AT1G22920.1	21798944
AT4G37240.1	EES01631	AT2G41090.1	17360592
AT4G37240.1	EES09201	AT2G41090.1	17360592
AT4G37240.1	EES16322	AT2G41090.1	17360592
AT4G37240.1	OQU78227	AT2G41090.1	17360592
AT4G37240.1	EES01631	AT2G41100.1	17360592
AT4G37240.1	EES09201	AT2G41100.1	17360592
AT4G37240.1	EES16322	AT2G41100.1	17360592
AT4G37240.1	OQU78227	AT2G41100.1	17360592
AT4G37240.1	KXG37587	AT4G14640.1	17360592
AT4G37240.1	KXG37588	AT4G14640.1	17360592
AT4G37240.1	EES01631	AT5G21274.1	17360592
AT4G37240.1	EES09201	AT5G21274.1	17360592
AT4G37240.1	EES16322	AT5G21274.1	17360592
AT4G37240.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033943_P001	Maize	plastid	90.42	90.96
Zm00001d013311_P001	Maize	plastid	78.44	81.88
Os03t0740200-00	Rice	plastid	80.84	79.41
TraesCS5A01G379900.1	Wheat	plastid	76.65	76.65
TraesCS5D01G389400.1	Wheat	plastid	76.65	75.74
TraesCS5B01G383500.1	Wheat	plastid	77.84	75.58
HORVU5Hr1G093900.1	Barley	plastid	68.86	65.71
EER93387	Sorghum	cytosol	48.5	43.09
GSMUA_Achr7P27420_001	Banana	cytosol	38.92	39.39
GSMUA_Achr2P08730_001	Banana	cytosol	38.32	38.55
Solyc02g089990.1.1	Tomato	nucleus	35.93	37.27
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	35.93	37.04
CDY45243	Canola	cytosol	30.54	36.43
Bra012084.1-P	Field mustard	cytosol	30.54	36.43
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	31.14	35.86
Solyc03g044860.1.1	Tomato	cytosol	31.14	35.62
EER95817	Sorghum	nucleus	40.72	35.05
CDX77946	Canola	cytosol	30.54	34.46
Solyc02g065430.1.1	Tomato	cytosol	31.14	34.21
CDX81387	Canola	cytosol	31.74	34.19
Bra036862.1-P	Field mustard	cytosol	29.94	33.78
VIT_00s0207g00140.t01	Wine grape	cytosol	32.93	33.74
VIT_00s0207g00180.t01	Wine grape	cytosol	32.93	33.74
PGSC0003DMT400007187	Potato	cytosol	30.54	33.55
AT3G50800.1	Thale cress	cytosol, nucleus, plastid	30.54	33.55
CDY28982	Canola	nucleus	31.14	33.33
CDX73789	Canola	cytosol	30.54	33.33
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	31.14	33.33
CDX90684	Canola	cytosol, nucleus, plastid	31.14	33.33
Bra037163.1-P	Field mustard	cytosol	30.54	32.9
CDY18612	Canola	cytosol	30.54	32.9
KRH76906	Soybean	cytosol	31.14	32.7
AT5G66580.1	Thale cress	cytosol	30.54	32.69
CDY28078	Canola	cytosol	31.14	32.5
CDY55087	Canola	cytosol	29.34	32.45
Bra031814.1-P	Field mustard	cytosol	29.34	32.45
KRH28562	Soybean	cytosol	29.34	30.06
VIT_03s0063g01940.t01	Wine grape	cytosol	31.14	29.89
Bra017789.1-P	Field mustard	nucleus	30.54	29.82
CDY42708	Canola	nucleus	29.94	29.24
CDX72612	Canola	nucleus	29.94	29.24
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	29.34	29.17
OQU89709	Sorghum	plastid	39.52	28.95
CDY24764	Canola	cytosol, nucleus, plastid	29.34	28.32
CDX89594	Canola	cytosol	27.54	28.22
CDX69254	Canola	cytosol	29.94	28.09
Bra011715.1-P	Field mustard	nucleus	29.34	28.0
CDX75606	Canola	nucleus	29.34	28.0
CDY22462	Canola	cytosol, nucleus, plastid	28.74	27.75
Bra032151.1-P	Field mustard	cytosol	26.95	27.61
AT2G23690.1	Thale cress	cytosol	26.95	27.61
CDY39665	Canola	cytosol	26.95	27.61
CDY46066	Canola	cytosol	26.35	26.99
CDX76853	Canola	cytosol	26.35	26.83
KRH69989	Soybean	cytosol	26.35	26.67
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	23.95	26.67
KRH08345	Soybean	cytosol	26.95	26.32
Bra039208.1-P	Field mustard	cytosol	20.96	25.18
EER88673	Sorghum	plastid	34.13	24.78
OQU84553	Sorghum	plastid	29.94	24.63
EES06442	Sorghum	plastid	29.34	24.02
EER96983	Sorghum	cytosol	31.14	22.41

Protein Annotations

EnsemblPlants:KXG37596	EnsemblPlantsGene:SORBI_3001G096400	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF27	PFAM:PF14009
ProteinID:KXG37596	ProteinID:KXG37596.1	SEG:seg	UniParc:UPI00081ADBC9	UniProt:A0A1B6QI53	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:-:7412104..7412607

Molecular Weight (calculated)

16590.7 Da

IEP (calculated)

8.679

GRAVY (calculated)

0.104

Length

167 amino acids

Sequence
(BLAST)

001: MGACNSCEAT AVAAAPGSTA AEARVVLADG ALRRFPGGTR ASQAVKAAAG TAAAAASWFL CSADGLELGG AVAAVGSEEA LQPGQLYFVL PAAMRRRPLQ
101: AEEMAALAIR ASAALVGDHD GPLVFPEAAA AAAGNGNGAR SGKACRRSRR GRSRGRDFVP DLGAIAE

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.