Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 54.6 | 58.28 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 54.6 | 58.28 |
| CDX89594 | Canola | cytosol | 51.15 | 54.6 |
| CDX76853 | Canola | cytosol | 51.15 | 54.27 |
| CDY46066 | Canola | cytosol | 50.57 | 53.99 |
| Bra032151.1-P | Field mustard | cytosol | 50.0 | 53.37 |
| CDY39665 | Canola | cytosol | 50.0 | 53.37 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 50.57 | 53.33 |
| AT2G23690.1 | Thale cress | cytosol | 49.43 | 52.76 |
| Bra017789.1-P | Field mustard | nucleus | 50.0 | 50.88 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 48.85 | 50.6 |
| CDY42708 | Canola | nucleus | 49.43 | 50.29 |
| CDX72612 | Canola | nucleus | 49.43 | 50.29 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 50.0 | 50.29 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 50.0 | 50.29 |
| Bra039208.1-P | Field mustard | cytosol | 39.08 | 48.92 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 46.55 | 48.8 |
| CDX75606 | Canola | nucleus | 48.28 | 48.0 |
| Bra011715.1-P | Field mustard | nucleus | 48.28 | 48.0 |
| CDX69254 | Canola | cytosol | 48.85 | 47.75 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 38.51 | 44.67 |
| Zm00001d013311_P001 | Maize | plastid | 31.03 | 33.75 |
| TraesCS5A01G379900.1 | Wheat | plastid | 32.18 | 33.53 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 36.78 | 33.51 |
| TraesCS5B01G383500.1 | Wheat | plastid | 32.76 | 33.14 |
| TraesCS5D01G389400.1 | Wheat | plastid | 32.18 | 33.14 |
| Os03t0740200-00 | Rice | plastid | 31.61 | 32.35 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 29.89 | 31.14 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 31.03 | 30.68 |
| HORVU5Hr1G093900.1 | Barley | plastid | 30.46 | 30.29 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 31.03 | 30.17 |
| Zm00001d033943_P001 | Maize | plastid | 28.74 | 30.12 |
| Os03t0768900-00 | Rice | cytosol | 30.46 | 30.11 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 30.46 | 30.11 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 29.89 | 29.55 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 29.89 | 29.55 |
| Zm00001d034190_P001 | Maize | cytosol | 30.46 | 29.12 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 29.89 | 29.05 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 29.89 | 29.05 |
| Zm00001d013178_P001 | Maize | cytosol | 31.03 | 29.03 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 29.31 | 28.98 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 29.31 | 28.98 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 30.46 | 28.8 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 28.74 | 28.41 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 27.59 | 28.07 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 29.31 | 27.27 |
| EER93387 | Sorghum | cytosol | 29.31 | 27.13 |
| HORVU2Hr1G061800.1 | Barley | plastid | 29.31 | 26.84 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 25.29 | 26.67 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 28.74 | 26.6 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 28.16 | 26.06 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 28.16 | 26.06 |
| TraesCS2D01G257800.1 | Wheat | plastid | 28.74 | 26.04 |
| TraesCS1A01G436400.1 | Wheat | plastid | 28.16 | 25.93 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 28.16 | 25.79 |
| TraesCS2A01G266000.1 | Wheat | plastid | 28.16 | 25.52 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 27.01 | 25.27 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 26.44 | 24.86 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 30.46 | 24.77 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 26.44 | 24.73 |
| Os07t0123100-00 | Rice | extracellular | 28.74 | 24.39 |
| Zm00001d018717_P001 | Maize | cytosol | 27.01 | 24.23 |
| EER95817 | Sorghum | nucleus | 26.44 | 23.71 |
| TraesCS5A01G403900.1 | Wheat | plastid | 31.61 | 23.61 |
| VIT_03s0063g01950.t01 | Wine grape | plastid | 25.29 | 22.34 |
| Zm00001d007974_P001 | Maize | nucleus | 23.56 | 21.24 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 18.39 | 16.16 |
Protein Annotations
| ArrayExpress:VIT_03s0063g01940 | EMBL:FN596006 | EnsemblPlants:VIT_03s0063g01940.t01 | EnsemblPlantsGene:VIT_03s0063g01940 | EntrezGene:100245324 | EntrezGene:109122340 |
| EntrezGene:LOC100245324 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | PFAM:PF14009 | ProteinID:CBI32535 |
| ProteinID:CBI32535.3 | RefSeq:XP_002281121 | RefSeq:XP_002281121.1 | RefSeq:XP_019074437.1 | SEG:seg | UniParc:UPI0001982E81 |
| UniProt:D7TPW2 | wikigene:100245324 | wikigene:LOC100245324 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3:+:5239353..5240470
Molecular Weight (calculated)
18831.6 Da
IEP (calculated)
5.348
GRAVY (calculated)
-0.301
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSCEST SVATAKLILQ DGKLQEVPCP VKVSFLLQKN PACFICNSDD MEFDDFISAI NSDDELQPDQ LYFALPMSWL KRPLRAEEMA SLAVKASEAL
101: MRGGAKGCGC CGKGVLGQVA FSQKEYVKAT RLVDADDGSG RLIEKRREKG GGGSGQHGRR GRDFTTNLTM VPEE
101: MRGGAKGCGC CGKGVLGQVA FSQKEYVKAT RLVDADDGSG RLIEKRREKG GGGSGQHGRR GRDFTTNLTM VPEE
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.