Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g109250.2.1 | Tomato | extracellular | 35.53 | 46.67 |
| PGSC0003DMT400064780 | Potato | extracellular | 36.04 | 45.81 |
| KRH24527 | Soybean | cytosol | 32.99 | 45.45 |
| KRH29531 | Soybean | cytosol | 32.49 | 44.44 |
| KRH28563 | Soybean | plastid | 26.9 | 36.05 |
| KRH76905 | Soybean | plastid | 25.89 | 34.93 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 24.87 | 30.06 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 24.37 | 29.45 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 22.34 | 25.29 |
| TraesCS5B01G270300.1 | Wheat | plastid | 23.86 | 24.23 |
| HORVU5Hr1G074010.1 | Barley | plastid | 22.34 | 23.91 |
| TraesCS5D01G278000.1 | Wheat | plastid | 23.35 | 23.83 |
| TraesCS5A01G269900.1 | Wheat | plastid | 21.83 | 22.28 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 20.3 | 20.94 |
| Os09t0492900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.78 | 20.22 |
| TraesCS5A01G270100.1 | Wheat | plastid | 21.83 | 19.46 |
| TraesCS5D01G278200.1 | Wheat | plastid | 21.32 | 19.0 |
| TraesCS5B01G270600.1 | Wheat | plastid | 20.81 | 18.55 |
| TraesCS5D01G278100.1 | Wheat | plastid | 20.3 | 18.43 |
| TraesCS5A01G270000.1 | Wheat | plastid | 19.8 | 17.97 |
| HORVU5Hr1G074030.1 | Barley | cytosol, mitochondrion | 20.81 | 17.52 |
| HORVU5Hr1G074020.1 | Barley | nucleus | 21.32 | 17.43 |
| EER96983 | Sorghum | cytosol | 20.3 | 17.24 |
| TraesCS5B01G270500.1 | Wheat | plastid | 18.78 | 17.13 |
| OQU89709 | Sorghum | plastid | 19.8 | 17.11 |
| Zm00001d020967_P001 | Maize | plastid | 19.8 | 16.67 |
| Zm00001d020968_P001 | Maize | plastid | 18.78 | 16.3 |
| Os09t0493000-01 | Rice | plastid | 2.03 | 1.99 |
Protein Annotations
| ArrayExpress:VIT_03s0063g01950 | EMBL:FN596006 | EnsemblPlants:VIT_03s0063g01950.t01 | EnsemblPlantsGene:VIT_03s0063g01950 | EntrezGene:100855234 | EntrezGene:LOC100855234 |
| InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF21 | PFAM:PF14009 | ProteinID:CCB56949 | ProteinID:CCB56949.1 |
| RefSeq:XP_003631624 | RefSeq:XP_003631624.1 | UniParc:UPI0002109129 | UniProt:F6HQJ2 | wikigene:100855234 | wikigene:LOC100855234 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:5243954..5244763
Molecular Weight (calculated)
21333.9 Da
IEP (calculated)
7.449
GRAVY (calculated)
0.004
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSHLM SKNGRCLSWP STAKIIHLDG KLQEFLHPIQ AGLILSQNPN CFLCSSESMF INSHAPQVPD KEELQLGQIY FLMPLSKSRS PLSLQDLCIL
101: AVKASAAIAH PNTAHLAIKT GRAAFPSAAQ GYCNMPSGLG INCQPAETAA AGLSSEMEAV IKGELTQEAK HEHKSCQSLG NLQECYLMVF NFVYKIQ
101: AVKASAAIAH PNTAHLAIKT GRAAFPSAAQ GYCNMPSGLG INCQPAETAA AGLSSEMEAV IKGELTQEAK HEHKSCQSLG NLQECYLMVF NFVYKIQ
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.