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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 4
  • plasma membrane 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:nucleus, plasma membrane, plastid
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G016740.4
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G038010.1
HORVU3Hr1G054660.1
HORVU3Hr1G079210.4
HORVU3Hr1G113750.1
HORVU4Hr1G026290.3
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G37240.1 HORVU0Hr1G018470.1 AT1G22920.1 21798944
AT4G37240.1 HORVU0Hr1G025410.1 AT1G22920.1 21798944
AT4G37240.1 HORVU1Hr1G008160.1 AT1G22920.1 21798944
AT4G37240.1 HORVU2Hr1G056160.5 AT1G22920.1 21798944
AT4G37240.1 HORVU2Hr1G067660.1 AT1G22920.1 21798944
AT4G37240.1 HORVU2Hr1G112000.1 AT1G22920.1 21798944
AT4G37240.1 HORVU3Hr1G021300.1 AT1G22920.1 21798944
AT4G37240.1 HORVU3Hr1G054660.1 AT1G22920.1 21798944
AT4G37240.1 HORVU3Hr1G113750.1 AT1G22920.1 21798944
AT4G37240.1 HORVU4Hr1G047410.2 AT1G22920.1 21798944
AT4G37240.1 HORVU4Hr1G048730.1 AT1G22920.1 21798944
AT4G37240.1 HORVU6Hr1G023630.1 AT1G22920.1 21798944
AT4G37240.1 HORVU7Hr1G078010.1 AT1G22920.1 21798944
AT4G37240.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT4G37240.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT4G37240.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT4G37240.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT4G37240.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT4G37240.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT4G37240.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT4G37240.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT4G37240.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT4G37240.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT4G37240.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT4G37240.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT4G37240.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT4G37240.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT4G37240.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT4G37240.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT4G37240.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT4G37240.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT4G37240.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT4G37240.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT4G37240.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT4G37240.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT4G37240.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT4G37240.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G257700.1 Wheat mitochondrion, nucleus, plastid 92.63 93.62
TraesCS2B01G276000.1 Wheat cytosol, nucleus, plastid 92.11 93.09
TraesCS2A01G266100.1 Wheat cytosol 79.47 91.52
HORVU1Hr1G094330.1 Barley cytosol 80.53 81.82
HORVU5Hr1G098290.1 Barley cytosol 55.26 59.66
HORVU5Hr1G098280.1 Barley cytosol 54.21 58.52
Zm00001d018717_P001 Maize cytosol 57.37 56.19
EER95817 Sorghum nucleus 56.84 55.67
Zm00001d007974_P001 Maize nucleus 51.05 50.26
HORVU2Hr1G061850.1 Barley extracellular, plastid 50.0 47.98
HORVU5Hr1G098260.1 Barley cytosol, mitochondrion 51.58 45.79
HORVU5Hr1G093900.1 Barley plastid 34.74 37.71
GSMUA_Achr7P27420_001 Banana cytosol 31.58 36.36
GSMUA_Achr2P08730_001 Banana cytosol 31.58 36.14
Solyc02g089990.1.1 Tomato nucleus 30.0 35.4
PGSC0003DMT400026013 Potato cytosol, nucleus, plastid 30.0 35.19
CDX77946 Canola cytosol 27.37 35.14
CDY45243 Canola cytosol 25.79 35.0
Bra036862.1-P Field mustard cytosol 26.84 34.46
Bra012084.1-P Field mustard cytosol 25.26 34.29
CDX73789 Canola cytosol 27.37 33.99
VIT_00s0207g00140.t01 Wine grape cytosol 28.95 33.74
CDX81387 Canola cytosol 27.37 33.55
AT5G66580.1 Thale cress cytosol 27.37 33.33
CDY28982 Canola nucleus 27.37 33.33
VIT_00s0207g00180.t01 Wine grape cytosol 28.42 33.13
Bra012887.1-P Field mustard cytosol, nucleus, plastid 26.84 32.69
CDX90684 Canola cytosol, nucleus, plastid 26.84 32.69
CDY55087 Canola cytosol 25.79 32.45
Bra031814.1-P Field mustard cytosol 25.79 32.45
PGSC0003DMT400059007 Potato cytosol, nucleus, plastid 24.74 32.41
CDY18612 Canola cytosol 26.32 32.26
Bra037163.1-P Field mustard cytosol 26.32 32.26
PGSC0003DMT400007187 Potato cytosol 25.79 32.24
AT3G50800.1 Thale cress cytosol, nucleus, plastid 25.79 32.24
Solyc02g065430.1.1 Tomato cytosol 25.79 32.24
Solyc03g044860.1.1 Tomato cytosol 24.74 32.19
CDY28078 Canola cytosol 26.84 31.88
KRH76906 Soybean cytosol 26.32 31.45
KRH28562 Soybean cytosol 26.84 31.29
CDX72612 Canola nucleus 27.89 30.99
HORVU6Hr1G034380.1 Barley plastid 31.05 30.89
Bra017789.1-P Field mustard nucleus 27.37 30.41
AT4G37240.1 Thale cress cytosol, nucleus, plastid 26.84 30.36
CDX89594 Canola cytosol 25.79 30.06
HORVU5Hr1G074010.1 Barley plastid 28.95 29.89
CDY42708 Canola nucleus 26.84 29.82
CDY46066 Canola cytosol 25.26 29.45
CDY39665 Canola cytosol 25.26 29.45
Bra032151.1-P Field mustard cytosol 25.26 29.45
VIT_03s0063g01940.t01 Wine grape cytosol 26.84 29.31
HORVU6Hr1G034360.1 Barley mitochondrion, plastid 26.84 29.14
KRH69989 Soybean cytosol 25.26 29.09
AT2G23690.1 Thale cress cytosol 24.74 28.83
Bra039208.1-P Field mustard cytosol 21.05 28.78
KRH08345 Soybean cytosol 25.79 28.66
CDY24764 Canola cytosol, nucleus, plastid 25.79 28.32
CDY22462 Canola cytosol, nucleus, plastid 25.79 28.32
HORVU7Hr1G093050.1 Barley mitochondrion, plastid 31.58 28.3
CDX76853 Canola cytosol 24.21 28.05
Bra010578.1-P Field mustard cytosol, nucleus, plastid 21.58 27.33
HORVU7Hr1G093080.1 Barley plastid 30.0 27.01
CDX69254 Canola cytosol 25.26 26.97
Bra011715.1-P Field mustard nucleus 24.74 26.86
CDX75606 Canola nucleus 24.74 26.86
HORVU6Hr1G034350.1 Barley cytosol 26.32 23.81
HORVU5Hr1G074030.1 Barley cytosol, mitochondrion 28.42 23.08
HORVU5Hr1G074020.1 Barley nucleus 28.42 22.41
Protein Annotations
EnsemblPlants:HORVU2Hr1G061800.1EnsemblPlantsGene:HORVU2Hr1G061800InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF62PFAM:PF14009
SEG:segUniParc:UPI000296B261UniProt:M0YHF3MapMan:35.2::
Description
No Description!
Coordinates
chrchr2H:+:417457301..417458401
Molecular Weight (calculated)
19493.3 Da
IEP (calculated)
8.483
GRAVY (calculated)
0.006
Length
190 amino acids
Sequence
(BLAST)
001: MGLCMSSGGA AAAAAVRAEG QPASTAMVLL PTGELREYPR PATAAEALED AVAGGAGWFL CDADAMGFEG PVAAVAGTDE LRPGQIYFVL PAEARKNGLR
101: REDLAALAVR ASAALVSKAS VNASGSGGRR RRAGSVSPLV FAPPPEVDET LTYKTVPALA AKRRPVARVK SAGRMQSRFA PDLTAIPECE
Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.