Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22462 | Canola | cytosol, nucleus, plastid | 88.69 | 86.13 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 86.9 | 84.39 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 74.4 | 83.33 |
| Bra017789.1-P | Field mustard | nucleus | 82.74 | 81.29 |
| CDY42708 | Canola | nucleus | 82.14 | 80.7 |
| CDX72612 | Canola | nucleus | 80.95 | 79.53 |
| Bra011715.1-P | Field mustard | nucleus | 82.14 | 78.86 |
| CDX75606 | Canola | nucleus | 82.14 | 78.86 |
| CDX69254 | Canola | cytosol | 82.14 | 77.53 |
| AT2G23690.1 | Thale cress | cytosol | 67.86 | 69.94 |
| Solyc03g044860.1.1 | Tomato | cytosol | 48.81 | 56.16 |
| Solyc02g089990.1.1 | Tomato | nucleus | 53.57 | 55.9 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 52.98 | 54.94 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 47.02 | 54.48 |
| KRH76906 | Soybean | cytosol | 51.19 | 54.09 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 48.81 | 53.95 |
| KRH28562 | Soybean | cytosol | 50.0 | 51.53 |
| AT5G66580.1 | Thale cress | cytosol | 46.43 | 50.0 |
| PGSC0003DMT400007187 | Potato | cytosol | 45.24 | 50.0 |
| Solyc02g065430.1.1 | Tomato | cytosol | 44.64 | 49.34 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 50.6 | 48.85 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 45.83 | 46.39 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 45.24 | 46.06 |
| KRH69989 | Soybean | cytosol | 44.05 | 44.85 |
| KRH08345 | Soybean | cytosol | 42.86 | 42.11 |
| Os03t0740200-00 | Rice | plastid | 33.33 | 32.94 |
| TraesCS5B01G383500.1 | Wheat | plastid | 32.74 | 31.98 |
| TraesCS5A01G379900.1 | Wheat | plastid | 31.55 | 31.74 |
| TraesCS5D01G389400.1 | Wheat | plastid | 31.55 | 31.36 |
| Zm00001d034190_P001 | Maize | cytosol | 33.93 | 31.32 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 32.74 | 31.25 |
| Zm00001d013311_P001 | Maize | plastid | 29.76 | 31.25 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 32.74 | 31.25 |
| Os03t0768900-00 | Rice | cytosol | 32.14 | 30.68 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 32.14 | 30.68 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 32.14 | 30.68 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 32.14 | 30.17 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 31.55 | 30.11 |
| EER93387 | Sorghum | cytosol | 33.33 | 29.79 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 32.74 | 29.57 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 30.95 | 29.55 |
| Zm00001d033943_P001 | Maize | plastid | 29.17 | 29.52 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 29.17 | 29.34 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 29.76 | 29.24 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 30.95 | 29.05 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 32.14 | 29.03 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 30.36 | 28.98 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 32.74 | 28.95 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 32.14 | 28.88 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 31.55 | 28.8 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 32.14 | 28.72 |
| TraesCS2D01G257800.1 | Wheat | plastid | 32.74 | 28.65 |
| Zm00001d013178_P001 | Maize | cytosol | 31.55 | 28.49 |
| TraesCS2A01G266000.1 | Wheat | plastid | 32.14 | 28.12 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 30.95 | 28.11 |
| AT1G21010.1 | Thale cress | cytosol | 35.12 | 28.1 |
| TraesCS1A01G436400.1 | Wheat | plastid | 31.55 | 28.04 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 29.76 | 27.93 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 30.95 | 27.66 |
| HORVU5Hr1G093900.1 | Barley | plastid | 28.57 | 27.43 |
| EER95817 | Sorghum | nucleus | 31.55 | 27.32 |
| Os07t0123100-00 | Rice | extracellular | 33.33 | 27.32 |
| HORVU2Hr1G061800.1 | Barley | plastid | 30.36 | 26.84 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 26.19 | 26.67 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 29.76 | 26.6 |
| AT1G76600.1 | Thale cress | nucleus | 32.74 | 25.46 |
| Zm00001d018717_P001 | Maize | cytosol | 29.17 | 25.26 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 31.55 | 24.77 |
| Zm00001d007974_P001 | Maize | nucleus | 27.98 | 24.35 |
| TraesCS5A01G403900.1 | Wheat | plastid | 32.74 | 23.61 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 20.83 | 17.68 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829878 | UniProt:A0A178V236 | ProteinID:AEE86772.1 | EMBL:AK118312 | ArrayExpress:AT4G37240 |
| EnsemblPlantsGene:AT4G37240 | RefSeq:AT4G37240 | TAIR:AT4G37240 | RefSeq:AT4G37240-TAIR-G | EnsemblPlants:AT4G37240.1 | TAIR:AT4G37240.1 |
| EMBL:AY085610 | EMBL:BT005538 | InterPro:DUF4228_plant | GO:GO:0005575 | RefSeq:NP_568020.1 | ProteinID:OAP00430.1 |
| PFAM:PF14009 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | UniProt:Q8LE56 | UniParc:UPI000000C697 | SEG:seg |
Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
Coordinates
chr4:+:17524461..17525294
Molecular Weight (calculated)
18028.7 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.149
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.