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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400023896
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400069203
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G37240.1 PGSC0003DMT400023896 AT1G22920.1 21798944
AT4G37240.1 PGSC0003DMT400069203 AT1G22920.1 21798944
AT4G37240.1 PGSC0003DMT400014123 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT2G41090.1 17360592
AT4G37240.1 PGSC0003DMT400014123 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT2G41100.1 17360592
AT4G37240.1 PGSC0003DMT400034833 AT4G14640.1 17360592
AT4G37240.1 PGSC0003DMT400042062 AT4G14640.1 17360592
AT4G37240.1 PGSC0003DMT400014123 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400018569 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400046278 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400054299 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400058435 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400070437 AT5G21274.1 17360592
AT4G37240.1 PGSC0003DMT400097662 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g089990.1.1 Tomato nucleus 96.91 97.52
PGSC0003DMT400059007 Potato cytosol, nucleus, plastid 59.88 66.9
PGSC0003DMT400007187 Potato cytosol 61.73 65.79
VIT_00s0207g00140.t01 Wine grape cytosol 63.58 63.19
VIT_00s0207g00180.t01 Wine grape cytosol 63.58 63.19
KRH76906 Soybean cytosol 58.64 59.75
CDX89594 Canola cytosol 58.64 58.28
Bra032151.1-P Field mustard cytosol 58.02 57.67
KRH28562 Soybean cytosol 58.02 57.67
CDY39665 Canola cytosol 58.02 57.67
AT2G23690.1 Thale cress cytosol 57.41 57.06
CDY46066 Canola cytosol 55.56 55.21
Bra017789.1-P Field mustard nucleus 56.79 53.8
CDX76853 Canola cytosol 54.32 53.66
AT4G37240.1 Thale cress cytosol, nucleus, plastid 54.94 52.98
CDX72612 Canola nucleus 55.56 52.63
CDY42708 Canola nucleus 55.56 52.63
CDY22462 Canola cytosol, nucleus, plastid 55.56 52.02
GSMUA_Achr7P27420_001 Banana cytosol 52.47 51.52
CDY24764 Canola cytosol, nucleus, plastid 54.94 51.45
Bra039208.1-P Field mustard cytosol 43.21 50.36
CDX75606 Canola nucleus 53.09 49.14
Bra011715.1-P Field mustard nucleus 53.09 49.14
CDX69254 Canola cytosol 53.7 48.88
GSMUA_Achr2P08730_001 Banana cytosol 50.0 48.8
KRH69989 Soybean cytosol 49.38 48.48
Bra010578.1-P Field mustard cytosol, nucleus, plastid 43.83 47.33
KRH08345 Soybean cytosol 48.15 45.61
Os03t0740200-00 Rice plastid 41.36 39.41
TraesCS5B01G383500.1 Wheat plastid 38.89 36.63
TraesCS5A01G379900.1 Wheat plastid 37.65 36.53
Zm00001d013311_P001 Maize plastid 35.8 36.25
Zm00001d033943_P001 Maize plastid 37.04 36.14
TraesCS5D01G389400.1 Wheat plastid 37.65 36.09
KXG37596 Sorghum cytosol, nucleus, plastid 37.04 35.93
Os03t0768900-00 Rice cytosol 38.27 35.23
Zm00001d034190_P001 Maize cytosol 38.89 34.62
TraesCS5A01G404200.1 Wheat cytosol 37.04 34.09
HORVU5Hr1G098280.1 Barley cytosol 36.42 33.52
TraesCS5D01G414000.1 Wheat cytosol 37.04 33.52
EER93387 Sorghum cytosol 38.27 32.98
TraesCS5A01G404100.1 Wheat cytosol 35.8 32.95
TraesCS5D01G414200.1 Wheat cytosol 35.8 32.95
Zm00001d013178_P001 Maize cytosol 37.65 32.8
TraesCS5B01G408800.1 Wheat cytosol 35.19 32.39
TraesCS1D01G444700.1 Wheat cytosol, extracellular, peroxisome, plastid 37.04 32.26
TraesCS5D01G414100.1 Wheat cytosol 35.19 31.84
TraesCS5A01G404000.1 Wheat cytosol 35.19 31.84
TraesCS5D01G414300.1 Wheat cytosol 34.57 31.82
HORVU5Hr1G098290.1 Barley cytosol 34.57 31.82
PGSC0003DMT400064780 Potato extracellular 30.25 31.61
TraesCS5B01G409000.1 Wheat cytosol 33.33 31.58
TraesCS5B01G408700.1 Wheat cytosol 35.8 31.52
TraesCS2A01G266100.1 Wheat cytosol 32.1 31.52
HORVU5Hr1G093900.1 Barley plastid 33.95 31.43
TraesCS1A01G436400.1 Wheat plastid 36.42 31.22
TraesCS2D01G257700.1 Wheat mitochondrion, nucleus, plastid 35.8 30.85
TraesCS1A01G436300.1 Wheat mitochondrion 35.8 30.53
HORVU1Hr1G094330.1 Barley cytosol 35.19 30.48
TraesCS2B01G276000.1 Wheat cytosol, nucleus, plastid 35.19 30.32
TraesCS2B01G276100.1 Wheat cytosol, extracellular, plastid 35.19 30.32
HORVU2Hr1G061800.1 Barley plastid 35.19 30.0
TraesCS2A01G266000.1 Wheat plastid 35.19 29.69
TraesCS1D01G444800.1 Wheat cytosol, plastid 33.95 29.57
PGSC0003DMT400025724 Potato cytosol, plastid 35.19 29.08
Os07t0123100-00 Rice extracellular 36.42 28.78
TraesCS1B01G471500.1 Wheat mitochondrion 32.72 28.65
TraesCS2D01G257800.1 Wheat plastid 33.95 28.65
EER95817 Sorghum nucleus 32.1 26.8
Zm00001d018717_P001 Maize cytosol 31.48 26.29
HORVU5Hr1G098260.1 Barley cytosol, mitochondrion 34.57 26.17
TraesCS5A01G403900.1 Wheat plastid 36.42 25.32
Zm00001d007974_P001 Maize nucleus 28.4 23.83
HORVU2Hr1G061850.1 Barley extracellular, plastid 23.46 19.19
Protein Annotations
EnsemblPlants:PGSC0003DMT400026013EnsemblPlantsGene:PGSC0003DMG400010038EntrezGene:102606002InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF17
PFAM:PF14009PGSC:PGSC0003DMG400010038RefSeq:XP_006338261.1SEG:segUniParc:UPI0002961AE6UniProt:M1AMH0
MapMan:35.2:::::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010038]
Coordinates
chr2:+:44717095..44717903
Molecular Weight (calculated)
17552.0 Da
IEP (calculated)
8.997
GRAVY (calculated)
-0.401
Length
162 amino acids
Sequence
(BLAST)
001: MGICSSCEST SIATAKLILQ DGRLQEFPYP VKASYLLQKD PSIFICNSDE MDFGDVVSAI SADEELQPGQ LYFALPLSKL KRRLKAEEMA ALAVKASSAL
101: NNCGGEKYGC HRKGSDFLVE KKGKRRDNND SAAAAAELRR ARSTGGSGRR GKFTARLTAI PE
Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.