Factsheet for PGSC0003DMT400025724

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082960.1.1	Tomato	cytosol	84.18	88.24
VIT_18s0122g00300.t01	Wine grape	plastid	49.49	50.79
AT1G21010.1	Thale cress	cytosol	46.94	43.81
CDY01339	Canola	nucleus	45.92	43.48
AT1G76600.1	Thale cress	nucleus	46.94	42.59
Bra012264.1-P	Field mustard	cytosol	44.9	42.51
CDX85960	Canola	cytosol	44.9	42.31
CDY20399	Canola	nucleus, plastid	45.92	42.25
CDY33663	Canola	cytosol	44.39	42.03
CDY00357	Canola	nucleus	43.88	41.55
Bra025866.1-P	Field mustard	cytosol	44.9	41.51
Bra008267.1-P	Field mustard	nucleus	44.9	41.51
CDY45978	Canola	nucleus	44.9	41.51
CDX96609	Canola	cytosol	44.39	41.43
Bra016439.1-P	Field mustard	cytosol	44.39	41.43
TraesCS6D01G158200.1	Wheat	plastid	22.45	41.12
CDX68092	Canola	cytosol, plastid	43.88	40.95
Bra003714.1-P	Field mustard	cytosol	42.86	40.0
CDY04592	Canola	plastid	45.41	36.93
CDY29485	Canola	plastid	44.9	36.36
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	29.08	35.19
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	26.02	35.17
PGSC0003DMT400007187	Potato	cytosol	26.53	34.21
CDY06423	Canola	cytosol	28.06	34.16
GSMUA_Achr9P12270_001	Banana	cytosol	31.63	33.7
TraesCS6D01G158100.1	Wheat	plastid	28.06	29.73
TraesCS6B01G196500.1	Wheat	plastid	28.57	29.47
TraesCS6D01G157600.1	Wheat	plastid	28.57	29.47
Os02t0193300-01	Rice	mitochondrion	28.57	29.17
TraesCS6D01G157700.1	Wheat	plastid	29.08	29.08
TraesCS7A01G394600.1	Wheat	plastid	29.08	29.08
PGSC0003DMT400064780	Potato	extracellular	22.96	29.03
TraesCS7A01G394700.1	Wheat	mitochondrion, plastid	29.59	29.0
TraesCS6D01G158000.1	Wheat	plastid	28.06	28.8
HORVU6Hr1G034380.1	Barley	plastid	28.06	28.8
TraesCS7B01G296600.1	Wheat	plastid	28.57	28.72
TraesCS6A01G168500.1	Wheat	mitochondrion	27.04	28.49
TraesCS7B01G296700.1	Wheat	plastid	27.55	28.12
TraesCS6B01G196600.1	Wheat	plastid	28.06	28.06
TraesCS7D01G390200.1	Wheat	mitochondrion, plastid	28.06	28.06
Os02t0193200-01	Rice	mitochondrion	28.57	28.0
TraesCS6A01G168600.1	Wheat	plastid	28.06	27.78
TraesCS7D01G390000.1	Wheat	plastid	27.55	27.55
OQU84553	Sorghum	plastid	28.06	27.09
HORVU6Hr1G034360.1	Barley	mitochondrion, plastid	23.98	26.86
HORVU7Hr1G093080.1	Barley	plastid	28.57	26.54
HORVU7Hr1G093050.1	Barley	mitochondrion, plastid	28.57	26.42
Zm00001d046687_P001	Maize	plastid	27.55	25.84
EES06442	Sorghum	plastid	26.53	25.49
Os02t0193100-01	Rice	cytosol, peroxisome, plastid	27.04	25.36
Zm00001d036787_P001	Maize	plastid	28.06	25.35
EER88673	Sorghum	plastid	28.57	24.35
Zm00001d015867_P001	Maize	plastid	26.53	24.3
TraesCS7D01G390100.1	Wheat	plastid	28.06	23.01
HORVU6Hr1G034350.1	Barley	cytosol	22.96	21.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400025724	EnsemblPlantsGene:PGSC0003DMG400009932	EntrezGene:102591626	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF15
PFAM:PF14009	PGSC:PGSC0003DMG400009932	RefSeq:XP_006342203.1	SEG:seg	UniParc:UPI0002955DC4	UniProt:M1ALX9
MapMan:35.2	:	:	:	:	:

Description

MRNA, 952 bp sequence [Source:PGSC_GENE;Acc:PGSC0003DMG400009932]

Coordinates

chr4:+:72069368..72070273

Molecular Weight (calculated)

21950.5 Da

IEP (calculated)

10.400

GRAVY (calculated)

-0.280

Length

196 amino acids

Sequence
(BLAST)

001: MGACLSSSST IVDQKQLTSY VISVNGELRQ YSVPINVSQV LQSDISSDHA SSFLCSSDRL YFDDFIPSLD SQYQLLPGQI YFMLPASKLK YRLSASDMAA
101: LAVKASTALE DLNNNKNKNK SRKSRKIMSK KRISPMLLQV EEDDYTQTNN KSTVGLGISM RSASVRKLQR LSSRRAKMAV RSFRKLITIP EGFVLF

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.