Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G158000.1 | Wheat | plastid | 97.31 | 94.76 |
| HORVU6Hr1G034380.1 | Barley | plastid | 88.71 | 86.39 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 76.34 | 81.14 |
| TraesCS6A01G168600.1 | Wheat | plastid | 76.88 | 72.22 |
| Os02t0193200-01 | Rice | mitochondrion | 65.05 | 60.5 |
| Os02t0193300-01 | Rice | mitochondrion | 62.37 | 60.42 |
| Zm00001d015867_P001 | Maize | plastid | 66.67 | 57.94 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 63.44 | 56.19 |
| TraesCS7A01G394600.1 | Wheat | plastid | 53.76 | 51.02 |
| OQU84553 | Sorghum | plastid | 54.3 | 49.75 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 53.23 | 49.5 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 34.41 | 34.78 |
| TraesCS5A01G269900.1 | Wheat | plastid | 32.8 | 31.61 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 32.26 | 31.41 |
| TraesCS5A01G270100.1 | Wheat | plastid | 36.02 | 30.32 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 26.88 | 30.3 |
| TraesCS5A01G379900.1 | Wheat | plastid | 26.88 | 29.94 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 27.96 | 29.55 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 27.96 | 29.55 |
| TraesCS5A01G270000.1 | Wheat | plastid | 34.41 | 29.49 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 27.96 | 29.05 |
| Solyc04g082960.1.1 | Tomato | cytosol | 29.03 | 28.88 |
| TraesCS2A01G266000.1 | Wheat | plastid | 29.57 | 28.65 |
| TraesCS1A01G436400.1 | Wheat | plastid | 29.03 | 28.57 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 29.03 | 28.42 |
| CDY33663 | Canola | cytosol | 31.18 | 28.02 |
| CDX96609 | Canola | cytosol | 31.18 | 27.62 |
| Bra016439.1-P | Field mustard | cytosol | 31.18 | 27.62 |
| AT1G21010.1 | Thale cress | cytosol | 30.65 | 27.14 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 28.49 | 27.04 |
| AT1G76600.1 | Thale cress | nucleus | 30.65 | 26.39 |
| Bra025866.1-P | Field mustard | cytosol | 29.57 | 25.94 |
| CDY01339 | Canola | nucleus | 28.49 | 25.6 |
| CDY45978 | Canola | nucleus | 29.03 | 25.47 |
| Bra008267.1-P | Field mustard | nucleus | 29.03 | 25.47 |
| CDY20399 | Canola | nucleus, plastid | 29.03 | 25.35 |
| Bra003714.1-P | Field mustard | cytosol | 28.49 | 25.24 |
| CDY00357 | Canola | nucleus | 27.96 | 25.12 |
| CDX68092 | Canola | cytosol, plastid | 27.96 | 24.76 |
| Bra012264.1-P | Field mustard | cytosol | 27.42 | 24.64 |
| CDX85960 | Canola | cytosol | 27.42 | 24.52 |
| CDY04592 | Canola | plastid | 29.57 | 22.82 |
| CDY29485 | Canola | plastid | 29.57 | 22.73 |
| CDY06423 | Canola | cytosol | 19.35 | 22.36 |
| TraesCS5A01G403900.1 | Wheat | plastid | 27.42 | 21.89 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G168500.1 | EnsemblPlantsGene:TraesCS6A01G168500 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF25 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:175560738..175561298
Molecular Weight (calculated)
19963.9 Da
IEP (calculated)
9.949
GRAVY (calculated)
-0.219
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAKVSSSSN HRGSLSEQAH QPASVRVIAA DGSLKELPAT PRVAVSDVLA GEAASFFVCN SDALYFNEPP PALASDELLR PGQIYFLLPA AVLRRPLSSA
101: DMAALAVRAG AKRPERRGGK KNLRVVPVRE EVEDCEDVMF NEKLNERTLG EFAVSVSPAK KSNGKLAARS RLRLKRALSI IQEAAD
101: DMAALAVRAG AKRPERRGGK KNLRVVPVRE EVEDCEDVMF NEKLNERTLG EFAVSVSPAK KSNGKLAARS RLRLKRALSI IQEAAD
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.