CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G158200.1	Wheat	plastid	31.53	59.81
TraesCS6B01G196600.1	Wheat	plastid	52.71	54.59
HORVU6Hr1G034380.1	Barley	plastid	51.23	54.45
TraesCS6A01G168500.1	Wheat	mitochondrion	49.75	54.3
TraesCS6B01G196500.1	Wheat	plastid	50.74	54.21
TraesCS6D01G157600.1	Wheat	plastid	50.25	53.68
TraesCS6D01G158000.1	Wheat	plastid	50.25	53.4
HORVU6Hr1G034360.1	Barley	mitochondrion, plastid	45.81	53.14
TraesCS6D01G158100.1	Wheat	plastid	48.28	52.97
TraesCS6A01G168600.1	Wheat	plastid	51.23	52.53
EES06442	Sorghum	plastid	52.22	51.96
TraesCS6D01G157700.1	Wheat	plastid	49.75	51.53
HORVU6Hr1G034350.1	Barley	cytosol	42.36	40.95
EER88673	Sorghum	plastid	44.83	39.57
GSMUA_Achr9P12270_001	Banana	cytosol	29.56	32.61
KXG37596	Sorghum	cytosol, nucleus, plastid	24.63	29.94
EER93387	Sorghum	cytosol	27.59	29.79
VIT_18s0122g00300.t01	Wine grape	plastid	27.59	29.32
Solyc04g082960.1.1	Tomato	cytosol	26.11	28.34
OQU89709	Sorghum	plastid	31.53	28.07
PGSC0003DMT400025724	Potato	cytosol, plastid	27.09	28.06
EER96983	Sorghum	cytosol	30.54	26.72
EER95817	Sorghum	nucleus	25.12	26.29
Bra003714.1-P	Field mustard	cytosol	25.12	24.29
CDX68092	Canola	cytosol, plastid	25.12	24.29
AT1G76600.1	Thale cress	nucleus	25.62	24.07
CDX85960	Canola	cytosol	24.63	24.04
AT1G21010.1	Thale cress	cytosol	24.63	23.81
CDY33663	Canola	cytosol	24.14	23.67
CDY45978	Canola	nucleus	24.63	23.58
Bra008267.1-P	Field mustard	nucleus	24.63	23.58
CDY20399	Canola	nucleus, plastid	24.63	23.47
Bra025866.1-P	Field mustard	cytosol	24.14	23.11
CDX96609	Canola	cytosol	23.65	22.86
Bra016439.1-P	Field mustard	cytosol	23.65	22.86
CDY01339	Canola	nucleus	23.15	22.71
CDY00357	Canola	nucleus	22.17	21.74
Bra012264.1-P	Field mustard	cytosol	22.17	21.74
CDY06423	Canola	cytosol	17.24	21.74
CDY04592	Canola	plastid	24.14	20.33
CDY29485	Canola	plastid	24.14	20.25

Protein Annotations

EnsemblPlants:OQU84553	EnsemblPlantsGene:SORBI_3004G076300	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF25	PFAM:PF14009
ProteinID:OQU84553	ProteinID:OQU84553.1	RefSeq:XP_002453463.1	SEG:seg	UniParc:UPI0001A85C09	UniProt:A0A1Z5RLD9
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6221311..6221922

Molecular Weight (calculated)

21493.4 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.088

Length

203 amino acids

Sequence
(BLAST)

001: MGSTLSCIHG NSVVSSQSQQ SAPPEPAMVI APNGTLKEVP PASDHLASVS DVLGSGASFF VCNSDALYFN EPPPALAAAE RLRPGQMYFV LPAEMLGRPL
101: STADMAALAV RATSALGTND KPPWRCRRGR VVPVTGLEGK DLDRDEAEQS VFYETLNELT LGGFAVFTAT ARSDEKVAAV ALRGTESSSA FTRMLSMIRE
201: DAE

Best Arabidopsis Sequence Match ( AT3G50800.1 )
(BLAST)

001: MGACASRESR RTETAKLILP DGTLQEFSTP VKVWQILQKN PTSFVCNSDD MDFDDAVLAV PGSEDLRPGE LYFVLPLTWL NHPLRADEMA ALAVKASSAL
101: AKSGGGGLSY NDEDVGECRV RRVKRNGCGG RGCGGGGKGR RKFTAELSSI AE

Arabidopsis Description

Uncharacterized protein At3g50800 [Source:UniProtKB/TrEMBL;Acc:Q9SVL8]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.