CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG27287
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	KXG27287	AT1G22920.1	21798944
AT4G37240.1	EES01631	AT2G41090.1	17360592
AT4G37240.1	EES09201	AT2G41090.1	17360592
AT4G37240.1	EES16322	AT2G41090.1	17360592
AT4G37240.1	OQU78227	AT2G41090.1	17360592
AT4G37240.1	EES01631	AT2G41100.1	17360592
AT4G37240.1	EES09201	AT2G41100.1	17360592
AT4G37240.1	EES16322	AT2G41100.1	17360592
AT4G37240.1	OQU78227	AT2G41100.1	17360592
AT4G37240.1	KXG37587	AT4G14640.1	17360592
AT4G37240.1	KXG37588	AT4G14640.1	17360592
AT4G37240.1	EES01631	AT5G21274.1	17360592
AT4G37240.1	EES09201	AT5G21274.1	17360592
AT4G37240.1	EES16322	AT5G21274.1	17360592
AT4G37240.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034190_P001	Maize	cytosol	87.23	90.11
Zm00001d013178_P001	Maize	cytosol	83.51	84.41
Os03t0768900-00	Rice	cytosol	65.96	70.45
HORVU5Hr1G098290.1	Barley	cytosol	63.3	67.61
TraesCS5A01G404200.1	Wheat	cytosol	62.77	67.05
TraesCS5D01G414300.1	Wheat	cytosol	62.23	66.48
HORVU5Hr1G098280.1	Barley	cytosol	61.7	65.91
TraesCS5D01G414200.1	Wheat	cytosol	61.7	65.91
TraesCS5D01G414000.1	Wheat	cytosol	62.23	65.36
TraesCS5B01G408800.1	Wheat	cytosol	60.64	64.77
TraesCS5A01G404100.1	Wheat	cytosol	60.64	64.77
TraesCS5B01G408700.1	Wheat	cytosol	63.3	64.67
TraesCS5B01G409000.1	Wheat	cytosol	58.51	64.33
TraesCS5D01G414100.1	Wheat	cytosol	61.17	64.25
TraesCS5A01G404000.1	Wheat	cytosol	61.17	64.25
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	58.51	51.4
TraesCS5A01G403900.1	Wheat	plastid	61.17	49.36
KXG37596	Sorghum	cytosol, nucleus, plastid	43.09	48.5
EER95817	Sorghum	nucleus	47.34	45.88
GSMUA_Achr2P08730_001	Banana	cytosol	35.64	40.36
GSMUA_Achr7P27420_001	Banana	cytosol	34.04	38.79
Solyc02g089990.1.1	Tomato	nucleus	32.98	38.51
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	32.98	38.27
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	27.66	35.86
CDY45243	Canola	cytosol	26.6	35.71
Solyc03g044860.1.1	Tomato	cytosol	27.66	35.62
KRH76906	Soybean	cytosol	29.79	35.22
VIT_00s0207g00140.t01	Wine grape	cytosol	30.32	34.97
VIT_00s0207g00180.t01	Wine grape	cytosol	30.32	34.97
Bra012084.1-P	Field mustard	cytosol	25.53	34.29
CDX77946	Canola	cytosol	26.6	33.78
Solyc02g065430.1.1	Tomato	cytosol	27.13	33.55
PGSC0003DMT400007187	Potato	cytosol	27.13	33.55
AT3G50800.1	Thale cress	cytosol, nucleus, plastid	27.13	33.55
CDX81387	Canola	cytosol	27.66	33.55
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	29.79	33.33
Bra017789.1-P	Field mustard	nucleus	30.32	33.33
KRH28562	Soybean	cytosol	28.72	33.13
Bra036862.1-P	Field mustard	cytosol	26.06	33.11
CDX72612	Canola	nucleus	29.79	32.75
CDY42708	Canola	nucleus	29.79	32.75
AT5G66580.1	Thale cress	cytosol	27.13	32.69
CDY28982	Canola	nucleus	27.13	32.69
CDX73789	Canola	cytosol	26.6	32.68
Bra032151.1-P	Field mustard	cytosol	28.19	32.52
CDY39665	Canola	cytosol	28.19	32.52
CDY46066	Canola	cytosol	28.19	32.52
Bra037163.1-P	Field mustard	cytosol	26.6	32.26
CDY18612	Canola	cytosol	26.6	32.26
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	26.6	32.05
CDX90684	Canola	cytosol, nucleus, plastid	26.6	32.05
CDY22462	Canola	cytosol, nucleus, plastid	29.26	31.79
Bra031814.1-P	Field mustard	cytosol	25.53	31.79
CDY55087	Canola	cytosol	25.53	31.79
CDX76853	Canola	cytosol	27.66	31.71
AT2G23690.1	Thale cress	cytosol	27.13	31.29
CDX89594	Canola	cytosol	27.13	31.29
CDY24764	Canola	cytosol, nucleus, plastid	28.72	31.21
KRH08345	Soybean	cytosol	28.19	30.99
Bra039208.1-P	Field mustard	cytosol	22.87	30.94
CDY28078	Canola	cytosol	26.06	30.62
EES06442	Sorghum	plastid	32.98	30.39
KRH69989	Soybean	cytosol	26.6	30.3
OQU89709	Sorghum	plastid	35.64	29.39
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	23.4	29.33
VIT_03s0063g01940.t01	Wine grape	cytosol	27.13	29.31
CDX69254	Canola	cytosol	27.13	28.65
CDX75606	Canola	nucleus	26.6	28.57
Bra011715.1-P	Field mustard	nucleus	26.6	28.57
OQU84553	Sorghum	plastid	29.79	27.59
EER88673	Sorghum	plastid	30.85	25.22
EER96983	Sorghum	cytosol	29.79	24.14

Protein Annotations

EnsemblPlants:EER93387	EnsemblPlantsGene:SORBI_3001G076800	EntrezGene:8083967	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF63
PFAM:PF14009	ProteinID:EER93387	ProteinID:EER93387.1	RefSeq:XP_002466389.1	SEG:seg	UniParc:UPI0001A82CAF
UniProt:C5WZ90	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:5905779..5906811

Molecular Weight (calculated)

19325.8 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.032

Length

188 amino acids

Sequence
(BLAST)

001: MGICMSSDAA DEGAATARVV LPSGELREYA PPATAATALQ AASGGDGEGS SWFLCDADGI AFEGGPVAVA AVAPGEELQA GQIYFVLPAE MQRRRLTRDE
101: VAALAVRASS ALVKAAAAQP SSPCRRRRRG AVAPLVFPVP EEEYAAAEPV SPVAAKSAVA AAQKRRVAYR GGRASRFSPD LTAIPETE

Best Arabidopsis Sequence Match ( AT1G76600.1 )
(BLAST)

001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN

Arabidopsis Description

Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.