Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017789.1-P | Field mustard | nucleus | 97.08 | 97.08 |
| CDY42708 | Canola | nucleus | 95.91 | 95.91 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 82.46 | 81.5 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 79.53 | 80.95 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 81.87 | 80.92 |
| CDX75606 | Canola | nucleus | 79.53 | 77.71 |
| CDX69254 | Canola | cytosol | 80.12 | 76.97 |
| CDX89594 | Canola | cytosol | 67.84 | 71.17 |
| CDY39665 | Canola | cytosol | 66.08 | 69.33 |
| CDY46066 | Canola | cytosol | 64.33 | 67.48 |
| CDX76853 | Canola | cytosol | 63.74 | 66.46 |
| CDX77946 | Canola | cytosol | 48.54 | 56.08 |
| Solyc02g089990.1.1 | Tomato | nucleus | 52.63 | 55.9 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 52.63 | 55.56 |
| CDX73789 | Canola | cytosol | 49.12 | 54.9 |
| KRH76906 | Soybean | cytosol | 50.88 | 54.72 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 49.71 | 54.49 |
| CDY45243 | Canola | cytosol | 44.44 | 54.29 |
| CDY55087 | Canola | cytosol | 47.37 | 53.64 |
| CDY28982 | Canola | nucleus | 48.54 | 53.21 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 45.03 | 53.1 |
| CDY18612 | Canola | cytosol | 47.95 | 52.9 |
| CDX81387 | Canola | cytosol | 47.37 | 52.26 |
| Solyc03g044860.1.1 | Tomato | cytosol | 44.44 | 52.05 |
| KRH28562 | Soybean | cytosol | 49.12 | 51.53 |
| CDY28078 | Canola | cytosol | 47.95 | 51.25 |
| PGSC0003DMT400007187 | Potato | cytosol | 44.44 | 50.0 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 50.29 | 49.43 |
| Solyc02g065430.1.1 | Tomato | cytosol | 43.86 | 49.34 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 46.78 | 48.19 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 46.2 | 47.88 |
| KRH69989 | Soybean | cytosol | 41.52 | 43.03 |
| KRH08345 | Soybean | cytosol | 40.94 | 40.94 |
| Os03t0740200-00 | Rice | plastid | 32.75 | 32.94 |
| TraesCS5A01G379900.1 | Wheat | plastid | 32.16 | 32.93 |
| TraesCS5B01G383500.1 | Wheat | plastid | 32.75 | 32.56 |
| TraesCS5D01G389400.1 | Wheat | plastid | 32.16 | 32.54 |
| Zm00001d013311_P001 | Maize | plastid | 29.82 | 31.88 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 32.75 | 31.82 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 32.75 | 31.82 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 32.16 | 31.25 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 32.16 | 31.25 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 32.16 | 31.25 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 32.16 | 30.73 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 31.58 | 30.68 |
| Zm00001d034190_P001 | Maize | cytosol | 32.16 | 30.22 |
| Zm00001d033943_P001 | Maize | plastid | 29.24 | 30.12 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 30.99 | 30.11 |
| Os03t0768900-00 | Rice | cytosol | 30.99 | 30.11 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 32.75 | 30.11 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 33.33 | 30.0 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 29.24 | 29.94 |
| EER93387 | Sorghum | cytosol | 32.75 | 29.79 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 32.75 | 29.79 |
| TraesCS2D01G257800.1 | Wheat | plastid | 33.33 | 29.69 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 30.99 | 29.61 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 30.99 | 29.61 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 32.16 | 29.41 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 31.58 | 29.35 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 29.24 | 29.24 |
| TraesCS2A01G266000.1 | Wheat | plastid | 32.75 | 29.17 |
| HORVU5Hr1G093900.1 | Barley | plastid | 29.82 | 29.14 |
| TraesCS1A01G436400.1 | Wheat | plastid | 32.16 | 29.1 |
| EER95817 | Sorghum | nucleus | 32.75 | 28.87 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 30.99 | 28.65 |
| CDY01339 | Canola | nucleus | 34.5 | 28.5 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 30.99 | 28.19 |
| CDX96609 | Canola | cytosol | 34.5 | 28.1 |
| CDY33663 | Canola | cytosol | 33.92 | 28.02 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 30.41 | 27.96 |
| HORVU2Hr1G061800.1 | Barley | plastid | 30.99 | 27.89 |
| Os07t0123100-00 | Rice | extracellular | 33.33 | 27.8 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 30.41 | 27.66 |
| Zm00001d013178_P001 | Maize | cytosol | 29.82 | 27.42 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 26.32 | 27.27 |
| Zm00001d018717_P001 | Maize | cytosol | 30.41 | 26.8 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 33.33 | 26.64 |
| CDY00357 | Canola | nucleus | 32.16 | 26.57 |
| CDY20399 | Canola | nucleus, plastid | 32.75 | 26.29 |
| CDY45978 | Canola | nucleus | 32.16 | 25.94 |
| Zm00001d007974_P001 | Maize | nucleus | 29.24 | 25.91 |
| CDX85960 | Canola | cytosol | 30.99 | 25.48 |
| CDX68092 | Canola | cytosol, plastid | 30.99 | 25.24 |
| CDY04592 | Canola | plastid | 34.5 | 24.48 |
| CDY29485 | Canola | plastid | 34.5 | 24.38 |
| TraesCS5A01G403900.1 | Wheat | plastid | 32.16 | 23.61 |
| CDY06423 | Canola | cytosol | 19.3 | 20.5 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 21.64 | 18.69 |
Protein Annotations
| EnsemblPlants:CDX72612 | EnsemblPlantsGene:GSBRNA2T00100158001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | PFAM:PF14009 |
| ProteinID:CDX72612 | ProteinID:CDX72612.1 | SEG:seg | UniParc:UPI0004EC8455 | MapMan:35.2 | : |
Description
BnaC07g46340D
Coordinates
chrLK031796:-:2185703..2186218
Molecular Weight (calculated)
18186.6 Da
IEP (calculated)
5.346
GRAVY (calculated)
-0.289
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSEST QVATAKLILQ DGRMIEFTSP VKVGYVLQKY PMCFICNSDD MDFDDAVSAI SADEELQLGQ IYFALPLRWL REPLRADEMA TLAVKASAAL
101: MQSGGGGGSC RRKRVDPIVA GESLKRFGSG DDTVGSGGGR RKGRDGDGGA SSSSSGRRRK CYAAELSAIE E
101: MQSGGGGGSC RRKRVDPIVA GESLKRFGSG DDTVGSGGGR RKGRDGDGGA SSSSSGRRRK CYAAELSAIE E
001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.