Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G266000.1 | Wheat | plastid | 97.4 | 97.4 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 93.23 | 95.21 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 85.94 | 87.77 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 76.56 | 79.03 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 74.48 | 76.88 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 55.73 | 60.8 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 55.21 | 60.23 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 55.73 | 59.78 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 54.17 | 58.1 |
| EER95817 | Sorghum | nucleus | 56.25 | 55.67 |
| Os07t0123100-00 | Rice | extracellular | 58.85 | 55.12 |
| Zm00001d018717_P001 | Maize | cytosol | 55.21 | 54.64 |
| Zm00001d007974_P001 | Maize | nucleus | 50.52 | 50.26 |
| TraesCS5D01G389400.1 | Wheat | plastid | 36.98 | 42.01 |
| CDX77946 | Canola | cytosol | 29.69 | 38.51 |
| Bra036862.1-P | Field mustard | cytosol | 29.17 | 37.84 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 32.29 | 37.35 |
| CDX73789 | Canola | cytosol | 29.69 | 37.25 |
| CDY45243 | Canola | cytosol | 27.08 | 37.14 |
| CDY28982 | Canola | nucleus | 29.69 | 36.54 |
| Bra012084.1-P | Field mustard | cytosol | 26.56 | 36.43 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 31.25 | 36.36 |
| CDX81387 | Canola | cytosol | 29.17 | 36.13 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 29.17 | 35.9 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 29.17 | 35.9 |
| AT5G66580.1 | Thale cress | cytosol | 28.65 | 35.26 |
| CDY55087 | Canola | cytosol | 27.6 | 35.1 |
| Bra031814.1-P | Field mustard | cytosol | 27.6 | 35.1 |
| VIT_00s0207g00140.t01 | Wine grape | cytosol | 29.69 | 34.97 |
| AT3G50800.1 | Thale cress | cytosol, nucleus, plastid | 27.6 | 34.87 |
| CDY18612 | Canola | cytosol | 28.12 | 34.84 |
| Bra037163.1-P | Field mustard | cytosol | 28.12 | 34.84 |
| TraesCS6D01G158200.1 | Wheat | plastid | 19.27 | 34.58 |
| CDY28078 | Canola | cytosol | 28.65 | 34.38 |
| VIT_00s0207g00180.t01 | Wine grape | cytosol | 29.17 | 34.36 |
| Solyc02g089990.1.1 | Tomato | nucleus | 28.65 | 34.16 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 28.65 | 33.95 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 25.52 | 33.79 |
| KRH76906 | Soybean | cytosol | 27.6 | 33.33 |
| CDX72612 | Canola | nucleus | 29.69 | 33.33 |
| Bra017789.1-P | Field mustard | nucleus | 29.17 | 32.75 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 28.65 | 32.74 |
| KRH28562 | Soybean | cytosol | 27.6 | 32.52 |
| Solyc03g044860.1.1 | Tomato | cytosol | 24.48 | 32.19 |
| CDY42708 | Canola | nucleus | 28.65 | 32.16 |
| Bra032151.1-P | Field mustard | cytosol | 27.08 | 31.9 |
| CDY39665 | Canola | cytosol | 27.08 | 31.9 |
| CDY46066 | Canola | cytosol | 27.08 | 31.9 |
| Bra039208.1-P | Field mustard | cytosol | 22.92 | 31.65 |
| Solyc02g065430.1.1 | Tomato | cytosol | 25.0 | 31.58 |
| PGSC0003DMT400007187 | Potato | cytosol | 25.0 | 31.58 |
| AT2G23690.1 | Thale cress | cytosol | 26.56 | 31.29 |
| CDX89594 | Canola | cytosol | 26.56 | 31.29 |
| TraesCS7D01G390000.1 | Wheat | plastid | 31.77 | 31.12 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 27.6 | 30.64 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 27.6 | 30.64 |
| CDX76853 | Canola | cytosol | 26.04 | 30.49 |
| KRH69989 | Soybean | cytosol | 26.04 | 30.3 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 30.73 | 30.1 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.44 | 30.0 |
| KRH08345 | Soybean | cytosol | 26.56 | 29.82 |
| TraesCS6D01G158000.1 | Wheat | plastid | 28.65 | 28.8 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 26.04 | 28.74 |
| CDX69254 | Canola | cytosol | 26.56 | 28.65 |
| TraesCS6D01G157700.1 | Wheat | plastid | 29.17 | 28.57 |
| Bra011715.1-P | Field mustard | nucleus | 26.04 | 28.57 |
| CDX75606 | Canola | nucleus | 26.04 | 28.57 |
| TraesCS6D01G158100.1 | Wheat | plastid | 27.08 | 28.11 |
| TraesCS6D01G157600.1 | Wheat | plastid | 27.6 | 27.89 |
| TraesCS5D01G278000.1 | Wheat | plastid | 26.56 | 26.42 |
| TraesCS7D01G390100.1 | Wheat | plastid | 32.29 | 25.94 |
| TraesCS5D01G278100.1 | Wheat | plastid | 28.12 | 24.88 |
| TraesCS5D01G278200.1 | Wheat | plastid | 26.56 | 23.08 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G257800.1 | EnsemblPlantsGene:TraesCS2D01G257800 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF62 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:313811036..313811614
Molecular Weight (calculated)
19891.9 Da
IEP (calculated)
8.483
GRAVY (calculated)
0.008
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCMSSGGA AVAAVRSEGL AASTAMVLLP TGELREYPRP ATVAQALQDS VEAGDGSAGW FLCDADVMGF EGPVAAVGGG EELRPGQIYF VLPAEVKRNG
101: LRREDVAALA VRASAALVSK ANTNASGSGG RRRRAGSVSP LVFAPPPEVD ETLAYKTVPT LVVKRRPVAR VKSAGRMQPR FAPDLTAIPE CE
101: LRREDVAALA VRASAALVSK ANTNASGSGG RRRRAGSVSP LVFAPPPEVD ETLAYKTVPT LVVKRRPVAR VKSAGRMQPR FAPDLTAIPE CE
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.