Factsheet for Bra011715.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra012351.1-P
Bra018296.1-P
Bra024548.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G37240.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G37240.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G37240.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G37240.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G37240.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G37240.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75606	Canola	nucleus	100.0	100.0
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	78.86	82.14
Bra017789.1-P	Field mustard	nucleus	79.43	81.29
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	67.43	78.67
Bra032151.1-P	Field mustard	cytosol	63.43	68.1
Bra039208.1-P	Field mustard	cytosol	48.57	61.15
PGSC0003DMT400059007	Potato	cytosol, nucleus, plastid	46.86	56.55
Solyc03g044860.1.1	Tomato	cytosol	46.86	56.16
Solyc02g089990.1.1	Tomato	nucleus	49.14	53.42
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	49.14	53.09
KRH76906	Soybean	cytosol	46.86	51.57
Bra012084.1-P	Field mustard	cytosol	41.14	51.43
Bra036862.1-P	Field mustard	cytosol	43.43	51.35
Bra012887.1-P	Field mustard	cytosol, nucleus, plastid	45.71	51.28
KRH28562	Soybean	cytosol	46.29	49.69
Bra037163.1-P	Field mustard	cytosol	43.43	49.03
VIT_03s0063g01940.t01	Wine grape	cytosol	48.0	48.28
PGSC0003DMT400007187	Potato	cytosol	41.71	48.03
Bra031814.1-P	Field mustard	cytosol	41.14	47.68
Solyc02g065430.1.1	Tomato	cytosol	41.14	47.37
GSMUA_Achr7P27420_001	Banana	cytosol	42.29	44.85
GSMUA_Achr2P08730_001	Banana	cytosol	41.71	43.98
KRH69989	Soybean	cytosol	38.86	41.21
KRH08345	Soybean	cytosol	39.43	40.35
Os03t0740200-00	Rice	plastid	31.43	32.35
TraesCS5A01G379900.1	Wheat	plastid	30.86	32.34
TraesCS5B01G383500.1	Wheat	plastid	31.43	31.98
TraesCS5D01G389400.1	Wheat	plastid	30.86	31.95
Zm00001d013311_P001	Maize	plastid	28.0	30.62
Zm00001d033943_P001	Maize	plastid	28.0	29.52
KXG37596	Sorghum	cytosol, nucleus, plastid	28.0	29.34
TraesCS5D01G414000.1	Wheat	cytosol	29.71	29.05
HORVU5Hr1G098280.1	Barley	cytosol	29.14	28.98
TraesCS5A01G404200.1	Wheat	cytosol	29.14	28.98
Os03t0768900-00	Rice	cytosol	29.14	28.98
Zm00001d034190_P001	Maize	cytosol	29.71	28.57
TraesCS5A01G404100.1	Wheat	cytosol	28.57	28.41
TraesCS5D01G414200.1	Wheat	cytosol	28.57	28.41
TraesCS5D01G414300.1	Wheat	cytosol	28.57	28.41
Bra016439.1-P	Field mustard	cytosol	33.71	28.1
HORVU5Hr1G093900.1	Barley	plastid	28.0	28.0
TraesCS5B01G408800.1	Wheat	cytosol	28.0	27.84
TraesCS1D01G444800.1	Wheat	cytosol, plastid	29.14	27.42
Bra025866.1-P	Field mustard	cytosol	33.14	27.36
HORVU5Hr1G098290.1	Barley	cytosol	27.43	27.27
TraesCS1B01G471500.1	Wheat	mitochondrion	28.57	27.03
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	28.57	26.88
TraesCS1A01G436300.1	Wheat	mitochondrion	29.14	26.84
TraesCS5D01G414100.1	Wheat	cytosol	27.43	26.82
HORVU1Hr1G094330.1	Barley	cytosol	28.57	26.74
TraesCS5B01G408700.1	Wheat	cytosol	28.0	26.63
EER93387	Sorghum	cytosol	28.57	26.6
TraesCS5B01G409000.1	Wheat	cytosol	25.71	26.32
EER95817	Sorghum	nucleus	29.14	26.29
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	28.0	26.06
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	28.0	26.06
TraesCS2D01G257800.1	Wheat	plastid	28.57	26.04
TraesCS1A01G436400.1	Wheat	plastid	28.0	25.93
Zm00001d013178_P001	Maize	cytosol	27.43	25.81
TraesCS5A01G404000.1	Wheat	cytosol	26.29	25.7
Bra012264.1-P	Field mustard	cytosol	30.29	25.6
TraesCS2A01G266000.1	Wheat	plastid	28.0	25.52
TraesCS2A01G266100.1	Wheat	cytosol	24.0	25.45
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	26.86	25.0
Bra008267.1-P	Field mustard	nucleus	30.29	25.0
Os07t0123100-00	Rice	extracellular	29.14	24.88
HORVU2Hr1G061800.1	Barley	plastid	26.86	24.74
Zm00001d018717_P001	Maize	cytosol	26.86	24.23
Zm00001d007974_P001	Maize	nucleus	26.29	23.83
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	29.14	23.83
Bra003714.1-P	Field mustard	cytosol	28.57	23.81
TraesCS5A01G403900.1	Wheat	plastid	29.14	21.89
HORVU2Hr1G061850.1	Barley	extracellular, plastid	19.43	17.17

Protein Annotations

EnsemblPlants:Bra011715.1	EnsemblPlants:Bra011715.1-P	EnsemblPlantsGene:Bra011715	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17
PFAM:PF14009	SEG:seg	UniParc:UPI00025467F3	UniProt:M4D5F8	MapMan:35.2	:

Description

AT4G37240 (E=8e-043) | unknown protein

Coordinates

chrA01:+:911431..911958

Molecular Weight (calculated)

18865.5 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.339

Length

175 amino acids

Sequence
(BLAST)

001: MGICSSTEST QVATAKLILQ DGRMMEFTKP VKVGYVLLKN PMCFICNSDD MEFDEALSAI SADEELQLGQ IYFALPLRYL RQPLQAEEMA ALAAKANSAF
101: MRSGGGGGGG SCRRRRVDPI VAGDKYRVRV ASCDDTVGSG FGRRKGRNAD GGGGGSTSSR RRRECYAAEL STIEE

Best Arabidopsis Sequence Match ( AT4G37240.1 )
(BLAST)

001: MGICSSSEST QVATAKLILQ DGRMMEFANP VKVGYVLLKY PMCFICNSDD MDFDDAVAAI SADEELQLGQ IYFALPLCWL RQPLKAEEMA ALAVKASSAL
101: MRGGGGGCRR KCVEPIVSDK LRMRVGSGDD TVGSGSGRRK VRNGDGGGSV SSSRRRKCYA AELSTIDE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.