Factsheet for Solyc02g089990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc06g073150.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g017300.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37240.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G37240.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G37240.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G37240.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G37240.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G37240.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G37240.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G37240.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G37240.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026013	Potato	cytosol, nucleus, plastid	97.52	96.91
Solyc03g044860.1.1	Tomato	cytosol	60.25	66.44
Solyc02g065430.1.1	Tomato	cytosol	60.25	63.82
VIT_00s0207g00140.t01	Wine grape	cytosol	63.98	63.19
VIT_00s0207g00180.t01	Wine grape	cytosol	63.98	63.19
KRH76906	Soybean	cytosol	59.01	59.75
CDX89594	Canola	cytosol	59.63	58.9
Bra032151.1-P	Field mustard	cytosol	59.01	58.28
CDY39665	Canola	cytosol	59.01	58.28
KRH28562	Soybean	cytosol	58.39	57.67
AT2G23690.1	Thale cress	cytosol	58.39	57.67
CDY46066	Canola	cytosol	56.52	55.83
CDX76853	Canola	cytosol	55.28	54.27
Bra017789.1-P	Field mustard	nucleus	57.14	53.8
AT4G37240.1	Thale cress	cytosol, nucleus, plastid	55.9	53.57
CDY42708	Canola	nucleus	55.9	52.63
CDX72612	Canola	nucleus	55.9	52.63
GSMUA_Achr7P27420_001	Banana	cytosol	53.42	52.12
CDY22462	Canola	cytosol, nucleus, plastid	55.9	52.02
CDY24764	Canola	cytosol, nucleus, plastid	55.28	51.45
Bra039208.1-P	Field mustard	cytosol	44.1	51.08
GSMUA_Achr2P08730_001	Banana	cytosol	50.93	49.4
CDX75606	Canola	nucleus	53.42	49.14
Bra011715.1-P	Field mustard	nucleus	53.42	49.14
KRH69989	Soybean	cytosol	50.31	49.09
CDX69254	Canola	cytosol	54.04	48.88
Bra010578.1-P	Field mustard	cytosol, nucleus, plastid	44.1	47.33
KRH08345	Soybean	cytosol	48.45	45.61
Os03t0740200-00	Rice	plastid	41.61	39.41
TraesCS5B01G383500.1	Wheat	plastid	39.13	36.63
TraesCS5A01G379900.1	Wheat	plastid	37.89	36.53
Zm00001d013311_P001	Maize	plastid	36.02	36.25
Zm00001d033943_P001	Maize	plastid	37.27	36.14
TraesCS5D01G389400.1	Wheat	plastid	37.89	36.09
KXG37596	Sorghum	cytosol, nucleus, plastid	37.27	35.93
Os03t0768900-00	Rice	cytosol	37.89	34.66
TraesCS5A01G404200.1	Wheat	cytosol	37.27	34.09
Zm00001d034190_P001	Maize	cytosol	38.51	34.07
TraesCS5D01G414000.1	Wheat	cytosol	37.27	33.52
EER93387	Sorghum	cytosol	38.51	32.98
HORVU5Hr1G098280.1	Barley	cytosol	36.02	32.95
TraesCS5D01G414200.1	Wheat	cytosol	36.02	32.95
TraesCS5A01G404100.1	Wheat	cytosol	36.02	32.95
Zm00001d013178_P001	Maize	cytosol	37.89	32.8
TraesCS5B01G408800.1	Wheat	cytosol	35.4	32.39
TraesCS1D01G444700.1	Wheat	cytosol, extracellular, peroxisome, plastid	37.27	32.26
TraesCS5D01G414100.1	Wheat	cytosol	35.4	31.84
TraesCS5A01G404000.1	Wheat	cytosol	35.4	31.84
TraesCS5D01G414300.1	Wheat	cytosol	34.78	31.82
HORVU5Hr1G098290.1	Barley	cytosol	34.78	31.82
TraesCS5B01G409000.1	Wheat	cytosol	33.54	31.58
TraesCS5B01G408700.1	Wheat	cytosol	36.02	31.52
TraesCS2A01G266100.1	Wheat	cytosol	32.3	31.52
HORVU5Hr1G093900.1	Barley	plastid	34.16	31.43
Solyc01g109250.2.1	Tomato	extracellular	29.19	31.33
TraesCS1A01G436400.1	Wheat	plastid	36.65	31.22
TraesCS2D01G257700.1	Wheat	mitochondrion, nucleus, plastid	36.02	30.85
TraesCS1A01G436300.1	Wheat	mitochondrion	36.02	30.53
HORVU1Hr1G094330.1	Barley	cytosol	35.4	30.48
TraesCS2B01G276100.1	Wheat	cytosol, extracellular, plastid	35.4	30.32
TraesCS2B01G276000.1	Wheat	cytosol, nucleus, plastid	35.4	30.32
HORVU2Hr1G061800.1	Barley	plastid	35.4	30.0
TraesCS2A01G266000.1	Wheat	plastid	35.4	29.69
TraesCS1D01G444800.1	Wheat	cytosol, plastid	34.16	29.57
Os07t0123100-00	Rice	extracellular	36.65	28.78
TraesCS1B01G471500.1	Wheat	mitochondrion	32.92	28.65
TraesCS2D01G257800.1	Wheat	plastid	34.16	28.65
Solyc04g082960.1.1	Tomato	cytosol	32.3	27.81
EER95817	Sorghum	nucleus	32.3	26.8
Zm00001d018717_P001	Maize	cytosol	31.68	26.29
HORVU5Hr1G098260.1	Barley	cytosol, mitochondrion	34.78	26.17
TraesCS5A01G403900.1	Wheat	plastid	36.65	25.32
Zm00001d007974_P001	Maize	nucleus	28.57	23.83
HORVU2Hr1G061850.1	Barley	extracellular, plastid	23.6	19.19

Protein Annotations

EnsemblPlants:Solyc02g089990.1.1	EnsemblPlantsGene:Solyc02g089990.1	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF17	PFAM:PF14009
SEG:seg	UniParc:UPI0002768E67	UniProt:K4BCF0	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:-:51677659..51678144

Molecular Weight (calculated)

17515.9 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.422

Length

161 amino acids

Sequence
(BLAST)

001: MGICSSCEST SIATAKLILQ DGRLQEFPYP VKASYLLQKD PSIFICNSDE MDFGDVVSAI SADEELQPGQ LYFALPLSNL KRRLKAEEMA ALAVKASSAL
101: NNCGTEKYGC RRKGSDFLVE KKGKRRDNND SAAAAELRRA RSSGGSGRRG KFTARLTAIP E

Best Arabidopsis Sequence Match ( AT2G23690.1 )
(BLAST)

001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE

Arabidopsis Description

HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.