Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017789.1-P | Field mustard | nucleus | 97.66 | 97.66 |
| CDX72612 | Canola | nucleus | 95.91 | 95.91 |
| CDY22462 | Canola | cytosol, nucleus, plastid | 84.21 | 83.24 |
| AT4G37240.1 | Thale cress | cytosol, nucleus, plastid | 80.7 | 82.14 |
| CDY24764 | Canola | cytosol, nucleus, plastid | 83.04 | 82.08 |
| CDX75606 | Canola | nucleus | 81.29 | 79.43 |
| CDX69254 | Canola | cytosol | 81.87 | 78.65 |
| CDX89594 | Canola | cytosol | 67.25 | 70.55 |
| CDY39665 | Canola | cytosol | 66.08 | 69.33 |
| CDY46066 | Canola | cytosol | 63.74 | 66.87 |
| CDX76853 | Canola | cytosol | 63.16 | 65.85 |
| CDX77946 | Canola | cytosol | 48.54 | 56.08 |
| Solyc02g089990.1.1 | Tomato | nucleus | 52.63 | 55.9 |
| PGSC0003DMT400026013 | Potato | cytosol, nucleus, plastid | 52.63 | 55.56 |
| CDX73789 | Canola | cytosol | 49.71 | 55.56 |
| CDX90684 | Canola | cytosol, nucleus, plastid | 50.29 | 55.13 |
| CDY45243 | Canola | cytosol | 45.03 | 55.0 |
| KRH76906 | Soybean | cytosol | 50.88 | 54.72 |
| CDY18612 | Canola | cytosol | 49.12 | 54.19 |
| CDY28982 | Canola | nucleus | 49.12 | 53.85 |
| PGSC0003DMT400059007 | Potato | cytosol, nucleus, plastid | 45.61 | 53.79 |
| CDY55087 | Canola | cytosol | 47.37 | 53.64 |
| CDX81387 | Canola | cytosol | 48.54 | 53.55 |
| Solyc03g044860.1.1 | Tomato | cytosol | 45.61 | 53.42 |
| KRH28562 | Soybean | cytosol | 49.71 | 52.15 |
| CDY28078 | Canola | cytosol | 48.54 | 51.88 |
| PGSC0003DMT400007187 | Potato | cytosol | 44.44 | 50.0 |
| VIT_03s0063g01940.t01 | Wine grape | cytosol | 50.29 | 49.43 |
| Solyc02g065430.1.1 | Tomato | cytosol | 43.86 | 49.34 |
| GSMUA_Achr7P27420_001 | Banana | cytosol | 46.78 | 48.48 |
| GSMUA_Achr2P08730_001 | Banana | cytosol | 46.2 | 47.59 |
| KRH69989 | Soybean | cytosol | 42.69 | 44.24 |
| KRH08345 | Soybean | cytosol | 42.69 | 42.69 |
| Os03t0740200-00 | Rice | plastid | 32.75 | 32.94 |
| TraesCS5A01G379900.1 | Wheat | plastid | 32.16 | 32.93 |
| TraesCS5B01G383500.1 | Wheat | plastid | 32.75 | 32.56 |
| TraesCS5D01G389400.1 | Wheat | plastid | 32.16 | 32.54 |
| Zm00001d013311_P001 | Maize | plastid | 29.82 | 31.88 |
| TraesCS5A01G404200.1 | Wheat | cytosol | 32.16 | 31.25 |
| HORVU5Hr1G098280.1 | Barley | cytosol | 32.16 | 31.25 |
| HORVU5Hr1G098290.1 | Barley | cytosol | 31.58 | 30.68 |
| TraesCS5A01G404100.1 | Wheat | cytosol | 31.58 | 30.68 |
| TraesCS5D01G414200.1 | Wheat | cytosol | 31.58 | 30.68 |
| Zm00001d034190_P001 | Maize | cytosol | 32.16 | 30.22 |
| TraesCS5D01G414000.1 | Wheat | cytosol | 31.58 | 30.17 |
| Zm00001d033943_P001 | Maize | plastid | 29.24 | 30.12 |
| TraesCS5B01G408800.1 | Wheat | cytosol | 30.99 | 30.11 |
| Os03t0768900-00 | Rice | cytosol | 30.99 | 30.11 |
| KXG37596 | Sorghum | cytosol, nucleus, plastid | 29.24 | 29.94 |
| EER93387 | Sorghum | cytosol | 32.75 | 29.79 |
| TraesCS1D01G444800.1 | Wheat | cytosol, plastid | 32.16 | 29.57 |
| TraesCS5D01G414300.1 | Wheat | cytosol | 30.41 | 29.55 |
| TraesCS1A01G436300.1 | Wheat | mitochondrion | 32.75 | 29.47 |
| TraesCS5D01G414100.1 | Wheat | cytosol | 30.41 | 29.05 |
| TraesCS5A01G404000.1 | Wheat | cytosol | 30.41 | 29.05 |
| HORVU1Hr1G094330.1 | Barley | cytosol | 31.58 | 28.88 |
| TraesCS5B01G408700.1 | Wheat | cytosol | 30.99 | 28.8 |
| TraesCS2B01G276100.1 | Wheat | cytosol, extracellular, plastid | 31.58 | 28.72 |
| TraesCS5B01G409000.1 | Wheat | cytosol | 28.66 | 28.66 |
| TraesCS2D01G257800.1 | Wheat | plastid | 32.16 | 28.65 |
| CDX96609 | Canola | cytosol | 35.09 | 28.57 |
| TraesCS1A01G436400.1 | Wheat | plastid | 31.58 | 28.57 |
| HORVU5Hr1G093900.1 | Barley | plastid | 29.24 | 28.57 |
| CDY01339 | Canola | nucleus | 34.5 | 28.5 |
| CDY33663 | Canola | cytosol | 34.5 | 28.5 |
| EER95817 | Sorghum | nucleus | 32.16 | 28.35 |
| TraesCS2A01G266000.1 | Wheat | plastid | 31.58 | 28.12 |
| TraesCS1B01G471500.1 | Wheat | mitochondrion | 30.41 | 28.11 |
| TraesCS2D01G257700.1 | Wheat | mitochondrion, nucleus, plastid | 30.41 | 27.66 |
| Zm00001d013178_P001 | Maize | cytosol | 29.82 | 27.42 |
| TraesCS1D01G444700.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 29.82 | 27.42 |
| Os07t0123100-00 | Rice | extracellular | 32.75 | 27.32 |
| TraesCS2B01G276000.1 | Wheat | cytosol, nucleus, plastid | 29.82 | 27.13 |
| CDY00357 | Canola | nucleus | 32.75 | 27.05 |
| HORVU2Hr1G061800.1 | Barley | plastid | 29.82 | 26.84 |
| CDY20399 | Canola | nucleus, plastid | 33.33 | 26.76 |
| TraesCS2A01G266100.1 | Wheat | cytosol | 25.73 | 26.67 |
| Zm00001d007974_P001 | Maize | nucleus | 29.82 | 26.42 |
| CDY45978 | Canola | nucleus | 32.75 | 26.42 |
| Zm00001d018717_P001 | Maize | cytosol | 29.82 | 26.29 |
| HORVU5Hr1G098260.1 | Barley | cytosol, mitochondrion | 32.75 | 26.17 |
| CDX85960 | Canola | cytosol | 31.58 | 25.96 |
| CDX68092 | Canola | cytosol, plastid | 31.58 | 25.71 |
| CDY04592 | Canola | plastid | 35.09 | 24.9 |
| CDY29485 | Canola | plastid | 35.09 | 24.79 |
| TraesCS5A01G403900.1 | Wheat | plastid | 31.58 | 23.18 |
| CDY06423 | Canola | cytosol | 19.88 | 21.12 |
| HORVU2Hr1G061850.1 | Barley | extracellular, plastid | 20.47 | 17.68 |
Protein Annotations
| EnsemblPlants:CDY42708 | EnsemblPlantsGene:GSBRNA2T00075242001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF17 | PFAM:PF14009 |
| ProteinID:CDY42708 | ProteinID:CDY42708.1 | SEG:seg | UniParc:UPI0004EF40FD | UniProt:A0A078I0U4 | MapMan:35.2 |
Description
BnaA03g53610DBnaA03g53610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0U4]
Coordinates
chrLK032532:-:165762..166460
Molecular Weight (calculated)
18182.6 Da
IEP (calculated)
7.803
GRAVY (calculated)
-0.319
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGICSSSESI QVATAKLILQ DGRMIEFTSP VKVGYVLQKY PMCFICNSDD MDFDDAVSAI SADEELQLGQ IYFALPLRWL REPLRADEMA ALAVKASAAL
101: MQSGGGGGSC RRQRVDPIVA GKSRKRFGSG DDTVGSGGGR RKGRDGDGGG SSSSSGRRRK CYAAELSGIE E
101: MQSGGGGGSC RRQRVDPIVA GKSRKRFGSG DDTVGSGGGR RKGRDGDGGG SSSSSGRRRK CYAAELSGIE E
001: MGICSSYEST QVATAKLILH DGRMMEFTSP VKVGYVLQKN PMCFICNSDD MDFDNVVSAI SADEEFQLGQ LYFALPLSSL HHSLKAEEMA ALAVKASSAL
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
101: MRSGGSCGRD KCRCRRKCVS PVIFSARRVA AVGANGETRN GKRRGGGGSG RRKYAAKLSK IEE
Arabidopsis Description
HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q680G2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.