Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025179.1-P | |
| Bra036351.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76600.1 | Bra025179.1-P | AT3G26030.1 | 21798944 |
| AT1G76600.1 | Bra036351.1-P | AT3G26030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45978 | Canola | nucleus | 99.53 | 99.53 |
| Bra003714.1-P | Field mustard | cytosol | 82.55 | 83.33 |
| AT1G76600.1 | Thale cress | nucleus | 76.89 | 75.46 |
| Bra025866.1-P | Field mustard | cytosol | 70.28 | 70.28 |
| Bra012264.1-P | Field mustard | cytosol | 64.62 | 66.18 |
| Bra016439.1-P | Field mustard | cytosol | 63.21 | 63.81 |
| VIT_18s0122g00300.t01 | Wine grape | plastid | 46.23 | 51.31 |
| Solyc04g082960.1.1 | Tomato | cytosol | 39.62 | 44.92 |
| PGSC0003DMT400025724 | Potato | cytosol, plastid | 41.51 | 44.9 |
| Bra012084.1-P | Field mustard | cytosol | 25.0 | 37.86 |
| TraesCS6D01G158200.1 | Wheat | plastid | 18.87 | 37.38 |
| GSMUA_Achr9P12270_001 | Banana | cytosol | 30.66 | 35.33 |
| Bra032151.1-P | Field mustard | cytosol | 26.42 | 34.36 |
| Bra039208.1-P | Field mustard | cytosol | 22.17 | 33.81 |
| Bra036862.1-P | Field mustard | cytosol | 23.11 | 33.11 |
| Bra017789.1-P | Field mustard | nucleus | 26.42 | 32.75 |
| Bra010578.1-P | Field mustard | cytosol, nucleus, plastid | 23.11 | 32.67 |
| Bra031814.1-P | Field mustard | cytosol | 23.11 | 32.45 |
| Bra037163.1-P | Field mustard | cytosol | 23.58 | 32.26 |
| Bra012887.1-P | Field mustard | cytosol, nucleus, plastid | 23.11 | 31.41 |
| TraesCS6D01G158100.1 | Wheat | plastid | 26.89 | 30.81 |
| HORVU6Hr1G034380.1 | Barley | plastid | 27.36 | 30.37 |
| TraesCS6A01G168600.1 | Wheat | plastid | 28.3 | 30.3 |
| Bra011715.1-P | Field mustard | nucleus | 25.0 | 30.29 |
| Os02t0193300-01 | Rice | mitochondrion | 27.36 | 30.21 |
| TraesCS6B01G196500.1 | Wheat | plastid | 26.89 | 30.0 |
| TraesCS6D01G157600.1 | Wheat | plastid | 26.89 | 30.0 |
| TraesCS6D01G158000.1 | Wheat | plastid | 26.89 | 29.84 |
| TraesCS6B01G196600.1 | Wheat | plastid | 27.36 | 29.59 |
| TraesCS6D01G157700.1 | Wheat | plastid | 27.36 | 29.59 |
| TraesCS6A01G168500.1 | Wheat | mitochondrion | 25.47 | 29.03 |
| Os02t0193200-01 | Rice | mitochondrion | 27.36 | 29.0 |
| TraesCS7D01G390200.1 | Wheat | mitochondrion, plastid | 25.94 | 28.06 |
| TraesCS7D01G390000.1 | Wheat | plastid | 25.47 | 27.55 |
| HORVU6Hr1G034360.1 | Barley | mitochondrion, plastid | 22.64 | 27.43 |
| TraesCS7A01G394600.1 | Wheat | plastid | 25.0 | 27.04 |
| TraesCS7A01G394700.1 | Wheat | mitochondrion, plastid | 25.0 | 26.5 |
| EES06442 | Sorghum | plastid | 25.47 | 26.47 |
| TraesCS7B01G296600.1 | Wheat | plastid | 24.06 | 26.15 |
| TraesCS7B01G296700.1 | Wheat | plastid | 23.58 | 26.04 |
| HORVU7Hr1G093050.1 | Barley | mitochondrion, plastid | 25.47 | 25.47 |
| Zm00001d036787_P001 | Maize | plastid | 25.47 | 24.88 |
| Zm00001d046687_P001 | Maize | plastid | 24.53 | 24.88 |
| HORVU7Hr1G093080.1 | Barley | plastid | 24.53 | 24.64 |
| OQU84553 | Sorghum | plastid | 23.58 | 24.63 |
| Os02t0193100-01 | Rice | cytosol, peroxisome, plastid | 24.06 | 24.4 |
| Zm00001d015867_P001 | Maize | plastid | 24.53 | 24.3 |
| EER88673 | Sorghum | plastid | 25.94 | 23.91 |
| HORVU6Hr1G034350.1 | Barley | cytosol | 22.17 | 22.38 |
| TraesCS7D01G390100.1 | Wheat | plastid | 24.53 | 21.76 |
Protein Annotations
| EnsemblPlants:Bra008267.1 | EnsemblPlants:Bra008267.1-P | EnsemblPlantsGene:Bra008267 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF15 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI0002545F29 | UniProt:M4CVM0 | MapMan:35.2 | : |
Description
AT1G76600 (E=2e-075) | unknown protein
Coordinates
chrA02:+:14223289..14223927
Molecular Weight (calculated)
23230.7 Da
IEP (calculated)
10.371
GRAVY (calculated)
-0.330
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLCVSVGRS DCDSSPTAKI VTVNGDLREY NVPVLASQVL EAESSSSSSS SRTSSYFLCN SDSLYYDDFI PAIESEEFLQ ADQIYFVLPI SKRQYRLTAS
101: DMAALAVKAS VAIEKAAGKK NRRRKSGRIS PVMMLNQPNE RSVAVNRSAN ETMMAQKGKV LNKTTPFKTA TTSGYSRSGS VRRFKRYASV GAKKLAARSI
201: KRLSTIYEGT VF
101: DMAALAVKAS VAIEKAAGKK NRRRKSGRIS PVMMLNQPNE RSVAVNRSAN ETMMAQKGKV LNKTTPFKTA TTSGYSRSGS VRRFKRYASV GAKKLAARSI
201: KRLSTIYEGT VF
001: MGLCVSVNRN EYVSSSTTAK IVTINGDLRE YDVPVLASQV LESESTSSSS SSSSSSYFLC NSDSLYYDDF IPAIESDEIL QANQIYFVLP ISKRQYRLSA
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
101: SDMAALAVKA SVAIEKAAGK KNRRRRSGRI SPVVTLNQAN DNRIAAVNNR IGGEATNMMM QKGKLPNRTT PFKDTNGYSR SGSVRKLKRY TSGRAKLAVR
201: SFRLRLSTIY EGSSFN
Arabidopsis Description
Poly polymerase [Source:UniProtKB/TrEMBL;Acc:Q9C9J8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.