CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76805
CDX96609
CDY00357
CDY01339
CDY04592
CDY20324
CDY29485
CDY33663
CDY45582
CDY68667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26030.1	CDX96609	AT1G21010.1	21798944
AT3G26030.1	CDY00357	AT1G21010.1	21798944
AT3G26030.1	CDY01339	AT1G21010.1	21798944
AT3G26030.1	CDY04592	AT1G21010.1	21798944
AT3G26030.1	CDY29485	AT1G21010.1	21798944
AT3G26030.1	CDY33663	AT1G21010.1	21798944
AT3G26030.1	CDX76805	AT2G24550.1	21798944
AT3G26030.1	CDY20324	AT2G24550.1	21798944
AT3G26030.1	CDY45582	AT2G24550.1	21798944
AT3G26030.1	CDY68667	AT2G24550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036351.1-P	Field mustard	cytosol	50.31	100.0
CDX99733	Canola	nucleus, plastid	98.11	92.49
CDX83579	Canola	cytosol	45.18	90.74
CDY13606	Canola	cytosol	45.07	90.72
AT3G26030.1	Thale cress	cytosol	44.55	89.1
CDX98102	Canola	cytosol, plastid	30.82	63.5
CDY04189	Canola	cytosol, golgi, nucleus	14.26	59.91
CDY44320	Canola	cytosol, plastid	31.66	59.45
CDY30030	Canola	plastid	30.82	59.27
CDY38628	Canola	cytosol, mitochondrion	31.55	59.14
CDY22925	Canola	plastid	30.29	58.5
CDY48287	Canola	plastid	30.19	58.06
CDY09766	Canola	mitochondrion, plastid	28.3	58.06
CDX90593	Canola	cytosol, plastid	28.2	57.97
CDX83578	Canola	cytosol	28.83	57.05
CDY41574	Canola	cytosol	28.83	56.35
CDY54611	Canola	cytosol	28.72	55.92
CDX73997	Canola	cytosol, plastid	28.41	55.42
CDY07942	Canola	cytosol, plastid	28.51	55.4
CDY13605	Canola	cytosol, plastid	28.93	54.22
CDX87083	Canola	cytosol	19.81	53.69
CDY04885	Canola	cytosol, plastid	26.42	52.28
CDY44370	Canola	cytosol, plastid	25.89	51.14
CDY54903	Canola	mitochondrion, plastid	25.47	50.0
CDY05497	Canola	mitochondrion, plastid	25.37	49.9
CDX80521	Canola	plastid	25.37	48.79
CDX88186	Canola	cytosol, plastid	25.05	48.28
CDX67616	Canola	cytosol	24.53	47.85
CDY50168	Canola	cytosol	8.07	47.83
CDY56962	Canola	cytosol, plastid	24.63	47.76
CDY07514	Canola	cytosol	24.32	47.44
CDX73425	Canola	cytosol, plastid	24.74	43.95
CDY08231	Canola	mitochondrion	15.09	42.73
CDY67412	Canola	mitochondrion	13.63	40.12
CDY35507	Canola	golgi	12.47	39.27

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078HTE2	UniProt:A0A078HTE2	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY40986	ProteinID:CDY40986	ProteinID:CDY40986.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008601	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00072258001	InterPro:IPR011989	PFAM:PF01603
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI0004EE6311	SEG:seg

Description

BnaA02g27760DBnaA02g27760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTE2]

Coordinates

chrLK032487:+:106911..112342

Molecular Weight (calculated)

110130.0 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.502

Length

954 amino acids

Sequence
(BLAST)

001: MWKQILSKLP NKKSSKNEHH HRGGREHGGH SSSSSSSHAS TSKSSDNGVG KTKHSQTKER STASSDVNPK SIANNNNGVF TPYEALPSFK DVPNTEKQTL
101: FIKKLNLCRV VFDFTDPTKN IKEKDIKRQT LLELVDYVNS ANGKFSEGSV QEVVRMVSAN IFRTLNPQPR ENKVIDALDL EEEEPSMDLA WPHLQLVYEL
201: FLRFVASPET DTKLAKRYID QSFVLRLLDL FDSEDPRERD CLKTILHRIY GKFMVHRPFI RKSINNIFYR FVFETEKHNG IAEFLEILGS IINGFALPLK
301: EEHKFVEKDC KLADTVIRGL LKYWPVTNSS KEVMFLNELE EVLEATQPPE FQRCMVPLFR QIARCLNSLH FQVAERALFL WNNNHIENLI MQSRKVILPI
401: IFPALERNAQ KHWNQAVHSL TLNVRKIFQD LDPELFKECL AKFKEDESKE GETKAKREAT WKRLEEAGMR KDPNMFKQIL GKLPKKPSSA AKFWDSNESQ
501: PPDNNNQGEE VLTQRSSSDG DSVSSVEVLP RLRDVPISEK QELFLKKLRL CCVVFDFVSE PQLNLKEKEI KRQTLLEVVD YVISSGNAKF PEQVIQEATK
601: MVSANLFSSN THQQCKNKTP EGLDLEEEQE GGSLNPSWPH LQIVYEFLLR LVASPNTDAK ISKKYIDPTF VLKLLDLFDS EDHREREYLK TILHRIYGRF
701: MVHRPFIRKT MNNILYDFIL ETGKHSGIAE FLEVLGSIIN GFALPLKEEH KLFLTRVLVP LHKLKCLPNY HQQLSYCVIQ FVEKDCKLAD TVIRGLLKYW
801: PVTNSSKEIM FLNELEEILE STQGTEFERC MVPLSRQIAQ CLSSSHFQVA ERALYLWNND HVSSLVRQNS RIILPIVLPA LEKNGSSHWN QAVKNLTDNV
901: LKVLSDTNPE LFEECLRKFQ EDQQNAEDNK KKNGETWRQL EEIVASKGHT SMEK

Best Arabidopsis Sequence Match ( AT3G26030.1 )
(BLAST)

001: MFKQILGKLP KKTSAKFWDN GESQTLDNNN NQGGGDEVLS QRTSSNGDTS LDCVSSFDVL PRLRDVSISE KQELFLKKLR LCCLVFDFVA EPQQNFKEKE
101: IKRQTLLEVV DYVISSGNGK FPESVIQEAT KMISANLFSN PHRQWKNKTP EALDLEEEEG SLNPSWPHLQ IVYEFLLRIV ASPNTDPKIS KKYIDHTFVL
201: KLLDLFDSED PREREYLKTI LHRIYGRFMV HRPFIRKTMN NILYDFIFET GKHSGIAEFL EVLGSIINGF ALPLKEEHKL FLTRVLIPLH KLKCLPNYHQ
301: QLSYCVIQFV EKDCKLADTV IRGMLKYWPV TNSAKEIMFL NELEEILEAT QLTEFERCMV PLSRQIAQCL SSSHFQVAER ALYLWNNDHV TNLVRQNSRI
401: ILPIVFPALE KNGSSHWNQA VKNLTENVLK VLSDTNPDLF EECLHKFQED QQKAEDTKKK NGETWRQLEE IVASMAK

Arabidopsis Description

B'DELTASerine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.