Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45582 | Canola | nucleus | 87.98 | 90.08 |
| Bra032085.1-P | Field mustard | nucleus | 87.21 | 87.21 |
| CDY68667 | Canola | cytosol | 43.8 | 75.33 |
| CDX76805 | Canola | nucleus | 67.05 | 70.9 |
| AT2G24550.1 | Thale cress | nucleus | 65.12 | 68.57 |
| CDY23302 | Canola | nucleus | 44.19 | 51.82 |
| CDY36435 | Canola | nucleus | 43.8 | 51.36 |
| CDX72307 | Canola | nucleus | 38.76 | 46.73 |
| CDY13436 | Canola | nucleus | 38.37 | 46.26 |
| CDX88142 | Canola | nucleus | 37.98 | 43.17 |
| CDY05462 | Canola | nucleus | 35.66 | 42.79 |
| CDY05394 | Canola | nucleus | 34.88 | 41.1 |
| CDY19822 | Canola | nucleus | 36.43 | 40.69 |
| CDY55465 | Canola | nucleus | 36.82 | 40.6 |
| CDX87106 | Canola | nucleus | 35.66 | 40.0 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 24.03 | 36.05 |
| KRH61944 | Soybean | nucleus | 30.62 | 31.1 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 27.91 | 30.9 |
| KRH52604 | Soybean | nucleus | 29.07 | 29.76 |
| EER88891 | Sorghum | nucleus | 24.81 | 29.09 |
| Solyc08g068970.2.1 | Tomato | nucleus | 19.77 | 28.81 |
| Zm00001d014648_P001 | Maize | nucleus | 19.77 | 28.02 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 24.42 | 28.0 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 23.64 | 27.6 |
| PGSC0003DMT400086234 | Potato | nucleus | 18.6 | 27.27 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 23.64 | 27.23 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 23.64 | 26.99 |
| Os06t0698748-02 | Rice | nucleus | 23.64 | 26.75 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 26.74 | 26.44 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 23.26 | 26.43 |
| EER99130 | Sorghum | nucleus | 25.58 | 25.68 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 24.42 | 25.51 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 24.42 | 25.51 |
| Zm00001d021006_P001 | Maize | nucleus | 25.19 | 25.19 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 26.74 | 25.0 |
| Zm00001d036499_P001 | Maize | nucleus | 20.93 | 24.88 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 26.36 | 24.73 |
| Os09t0499000-01 | Rice | nucleus | 24.81 | 24.71 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 26.36 | 24.55 |
| Zm00001d006059_P001 | Maize | nucleus | 24.81 | 24.43 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 23.64 | 24.3 |
| Zm00001d049768_P001 | Maize | nucleus | 24.42 | 24.23 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 25.58 | 24.09 |
| Zm00001d031545_P001 | Maize | nucleus | 24.81 | 23.53 |
| KRH04949 | Soybean | extracellular, vacuole | 28.29 | 22.74 |
| KXG25581 | Sorghum | nucleus | 24.42 | 22.66 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 22.87 | 17.93 |
Protein Annotations
| EnsemblPlants:CDY20324 | EnsemblPlantsGene:GSBRNA2T00012262001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDY20324 | ProteinID:CDY20324.1 |
| SEG:seg | UniParc:UPI0004EE16D1 | UniProt:A0A078G4L0 | MapMan:35.2 | : | : |
Description
BnaC04g36320DBnaC04g36320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4L0]
Coordinates
chrLK032105:-:606250..607574
Molecular Weight (calculated)
28548.8 Da
IEP (calculated)
4.442
GRAVY (calculated)
-0.878
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVMVGSPFG IGMEACVRDR TGVSAQDKTV PAAALFSADE PGRGGSPIGF ASRIGLRMNR KSPEESSEDS SSSIGECSEN EEEEEDDAVS FQRGGGGGTL
101: VSFTSSLEDS LPIKRGLSNH YVGKSKSFGN LMEQTNINAK DLEKGENPFN KRRRLLIANK LRSRGRSMSV SNFYSWQNPN SVSLLAVQEH NEVNHHNDDD
201: YQKNEDGDQT IKLLEKRNML MKNKRDLMAQ TQSCFCLSSL QEEEEDDDDD YEGGVDNE
101: VSFTSSLEDS LPIKRGLSNH YVGKSKSFGN LMEQTNINAK DLEKGENPFN KRRRLLIANK LRSRGRSMSV SNFYSWQNPN SVSLLAVQEH NEVNHHNDDD
201: YQKNEDGDQT IKLLEKRNML MKNKRDLMAQ TQSCFCLSSL QEEEEDDDDD YEGGVDNE
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.