Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009802.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY55465 | Canola | nucleus | 89.43 | 86.75 |
| CDY05394 | Canola | nucleus | 70.04 | 72.6 |
| CDY05462 | Canola | nucleus | 68.28 | 72.09 |
| CDX87106 | Canola | nucleus | 72.25 | 71.3 |
| CDY19822 | Canola | nucleus | 72.25 | 71.0 |
| AT5G24890.1 | Thale cress | nucleus | 66.96 | 63.33 |
| CDY68667 | Canola | cytosol | 25.11 | 38.0 |
| CDY20324 | Canola | nucleus | 43.17 | 37.98 |
| CDX72307 | Canola | nucleus | 35.24 | 37.38 |
| CDY45582 | Canola | nucleus | 40.97 | 36.9 |
| CDX76805 | Canola | nucleus | 38.77 | 36.07 |
| CDY13436 | Canola | nucleus | 33.92 | 35.98 |
| KRH52604 | Soybean | nucleus | 37.89 | 34.13 |
| CDY36435 | Canola | nucleus | 32.6 | 33.64 |
| CDY23302 | Canola | nucleus | 32.16 | 33.18 |
| KRH61944 | Soybean | nucleus | 37.0 | 33.07 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 22.03 | 29.07 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 28.63 | 28.89 |
| PGSC0003DMT400086234 | Potato | nucleus | 22.03 | 28.41 |
| KRH04949 | Soybean | extracellular, vacuole | 39.65 | 28.04 |
| Solyc08g068970.2.1 | Tomato | nucleus | 21.59 | 27.68 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 26.87 | 27.6 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 27.75 | 27.04 |
| Zm00001d049768_P001 | Maize | nucleus | 29.07 | 25.38 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 29.07 | 25.29 |
| KXG25581 | Sorghum | nucleus | 30.84 | 25.18 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 27.31 | 25.1 |
| EER99130 | Sorghum | nucleus | 28.19 | 24.9 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 26.43 | 24.29 |
| Zm00001d031545_P001 | Maize | nucleus | 29.07 | 24.26 |
| Zm00001d014648_P001 | Maize | nucleus | 19.38 | 24.18 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 29.07 | 24.0 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 29.07 | 23.91 |
| Zm00001d021006_P001 | Maize | nucleus | 26.87 | 23.64 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 25.99 | 23.51 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 28.63 | 23.47 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 28.19 | 23.36 |
| EER88891 | Sorghum | nucleus | 22.47 | 23.18 |
| Zm00001d006059_P001 | Maize | nucleus | 26.43 | 22.9 |
| Os09t0499000-01 | Rice | nucleus | 25.99 | 22.78 |
| Zm00001d036499_P001 | Maize | nucleus | 21.59 | 22.58 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 21.59 | 21.88 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 21.59 | 21.68 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 21.59 | 21.59 |
| Os06t0698748-02 | Rice | nucleus | 19.38 | 19.3 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 27.75 | 19.15 |
Protein Annotations
| EnsemblPlants:CDX88142 | EnsemblPlantsGene:GSBRNA2T00147584001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDX88142 | ProteinID:CDX88142.1 |
| SEG:seg | UniParc:UPI000253F26F | MapMan:35.2 | : | : | : |
Description
BnaA06g27330D
Coordinates
chrLK031854:-:890268..891444
Molecular Weight (calculated)
25071.0 Da
IEP (calculated)
4.062
GRAVY (calculated)
-1.141
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMMSGGPSF SIEVSEYGND PPATEKASSS SFSSGDTVNE DEAGLSRLGS GIWSGRTADY SSESSSSIGS PGDSEEEDEE SEEENDEELG LRGLSSMSSL
101: EDSLISKRGL SNHYKGKSKS FGNLGEIGSV KEVPKQENPL NKRRRLQICN KLARRSFYSW QNPKSMPLFP VNEDQDEDED NDDDLDEERG GSSFARKPSF
201: KNRALKSRSC FALSDLQEEE EDDDEDQ
101: EDSLISKRGL SNHYKGKSKS FGNLGEIGSV KEVPKQENPL NKRRRLQICN KLARRSFYSW QNPKSMPLFP VNEDQDEDED NDDDLDEERG GSSFARKPSF
201: KNRALKSRSC FALSDLQEEE EDDDEDQ
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.