CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
plastid 1
extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00625
KRH03466
KRH23958
KRH39841
KRH40554
KRH40946
KRH54542
KRH56919
KRH63357
KRH65189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24550.1	KRH00625	AT2G45660.1	21798944
AT2G24550.1	KRH40554	AT2G45660.1	21798944
AT2G24550.1	KRH65189	AT2G45660.1	21798944
AT2G24550.1	KRH03466	AT3G47620.1	21798944
AT2G24550.1	KRH54542	AT3G47620.1	21798944
AT2G24550.1	KRH56919	AT3G47620.1	21798944
AT2G24550.1	KRH63357	AT3G47620.1	21798944
AT2G24550.1	KRH40946	AT4G15930.1	21798944
AT2G24550.1	KRH23958	AT4G25200.1	21798944
AT2G24550.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020475.1-P	Field mustard	nucleus	29.28	43.52
CDY05462	Canola	nucleus	28.97	43.26
KRH52604	Soybean	nucleus	33.02	42.06
CDY05394	Canola	nucleus	28.35	41.55
KRH61944	Soybean	nucleus	32.71	41.34
CDX88142	Canola	nucleus	28.04	39.65
Bra009802.1-P	Field mustard	nucleus	28.04	39.65
CDX87106	Canola	nucleus	28.35	39.57
Bra036527.1-P	Field mustard	nucleus	28.04	39.3
CDY19822	Canola	nucleus	27.41	38.1
CDY55465	Canola	nucleus	27.1	37.18
AT5G24890.1	Thale cress	nucleus	27.41	36.67
VIT_01s0113g00410.t01	Wine grape	mitochondrion, nucleus	19.0	35.47
CDY68667	Canola	cytosol	16.2	34.67
GSMUA_Achr9P13850_001	Banana	nucleus	22.43	32.0
Bra007841.1-P	Field mustard	nucleus	23.68	31.15
CDX76805	Canola	nucleus	23.36	30.74
AT2G24550.1	Thale cress	nucleus	23.36	30.61
CDX72307	Canola	nucleus	19.94	29.91
Bra024004.1-P	Field mustard	nucleus	19.94	29.77
CDY13436	Canola	nucleus	19.63	29.44
CDY45582	Canola	nucleus	23.05	29.37
AT4G31510.1	Thale cress	nucleus	19.31	28.97
GSMUA_Achr3P05640_001	Banana	nucleus	20.87	28.76
CDY20324	Canola	nucleus	22.74	28.29
Bra032085.1-P	Field mustard	nucleus	22.74	28.29
TraesCS5D01G284800.1	Wheat	nucleus	21.5	27.94
TraesCS5B01G277200.1	Wheat	nucleus	21.5	27.94
Solyc08g068970.2.1	Tomato	nucleus	15.26	27.68
CDY36435	Canola	nucleus	18.69	27.27
Zm00001d021006_P001	Maize	nucleus	21.81	27.13
Zm00001d014648_P001	Maize	nucleus	15.26	26.92
EER99130	Sorghum	nucleus	21.5	26.85
TraesCS5A01G277500.1	Wheat	nucleus	20.87	26.69
CDY23302	Canola	nucleus	18.07	26.36
Bra010233.1-P	Field mustard	nucleus	18.07	26.36
Bra031516.1-P	Field mustard	nucleus	16.82	26.34
PGSC0003DMT400086234	Potato	nucleus	14.33	26.14
Os09t0499000-01	Rice	nucleus	20.87	25.87
GSMUA_Achr7P15940_001	Banana	nucleus	17.76	25.79
Zm00001d031545_P001	Maize	nucleus	21.81	25.74
Zm00001d049768_P001	Maize	nucleus	20.25	25.0
KXG25581	Sorghum	nucleus	21.5	24.82
Os08t0516900-01	Rice	nucleus, plasma membrane	19.94	24.52
Zm00001d006059_P001	Maize	nucleus	19.94	24.43
TraesCS7D01G253100.1	Wheat	mitochondrion, nucleus	20.25	23.64
TraesCS7A01G254500.1	Wheat	mitochondrion, nucleus	20.25	23.55
TraesCS7B01G150700.1	Wheat	mitochondrion, nucleus	20.25	23.47
HORVU7Hr1G052580.1	Barley	nucleus	19.94	23.36
TraesCS7A01G424800.1	Wheat	nucleus	16.51	23.35
TraesCS7D01G416800.1	Wheat	nucleus	16.2	23.21
EER88891	Sorghum	nucleus	15.89	23.18
Os06t0698748-02	Rice	nucleus	16.2	22.81
Zm00001d036499_P001	Maize	nucleus	15.26	22.58
TraesCS7B01G325100.1	Wheat	nucleus	15.89	22.57
HORVU5Hr1G075200.2	Barley	golgi, plastid	21.81	21.28

Protein Annotations

EMBL:ACUP02010643	EnsemblPlants:KRH04949	EnsemblPlantsGene:GLYMA_17G197700	EntrezGene:100792274	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33172	PANTHER:PTHR33172:SF15	ProteinID:KRH04949	ProteinID:KRH04949.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000233F38F	UniProt:A0A0R0FQU8	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr17:-:31249085..31250687

Molecular Weight (calculated)

36496.7 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.928

Length

321 amino acids

Sequence
(BLAST)

001: MYNSFCLSSI LFFFFHSFLH SSLKFPILKP SPRERVSTHN PQQREQQQPY TLSTSYSPPC LPPHFFSFPF TKSMDFLVGP TFTIDVASSP PPYDADLPGV
101: ATAADRPYGL FSGHSSDSES SIGTPDDSDD DENDVVSSKR NQSDEDEDKE EEEEEEVHSK LKGLASLDSL EDSLPIKRGL SNHFMGKSKS FTDLSQVNTL
201: NTVKELQKQE NPFNKRRRVQ IATKLTRKSS FYAWSNPKSM PLLPVHEDED NFLEEEEKPK KVSPSSSSSY SSEENKQDHV LVPKSYVDHM RARFGSFKSR
301: SLSDLKEHDE EQEQEDDDDD A

Best Arabidopsis Sequence Match ( AT5G24890.1 )
(BLAST)

001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ

Arabidopsis Description

At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.